Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03670 ATGAGTCTGATCACGCAGTTGTGTTCTGAGGAGTTTCCTGATGAAGGTGTGAATATTGCTCCACAACCATTAGAGGCGCTTCATGAAATTGGTCCTCCACCATTCCTCACAAAGACCTATGACATTGTCGATGATGGTTCCACTGATGAGATAGTTTCTTGGAGCAGAGGAAACAACAGCTTCGTGGTTTGGGATCCTCAGGCTTTTTCCATCACTCTTCTCCCCAGATACTTCAAGCACAACAACTTCTCCAGCTTTGTCAGACAACTTAACACCTATGGGTTTAGAAAGGTAGATCCGGATAAGTGGGAGTTTGCTAATGAAGGGTTTCTTAGAGGACAAAGGCATCTATTGAAGAACATAAGGAGGAGGAAGACAACTCATCAACAACAACCTCAGCCACCACAACAAGCTCTAGATTCTTTTGTTGAAGTGGGGAGGTTTGGATTAGATGGAGAAGTTGATGCACTGAGACGTGACAAGCAAGTTCTCATGGTGGAGCTAGTGAAGCTTAGACAACAACAGCATAACACAAGAAACCACCTTCAATCAATGGAGAGTAGGCTTAAGAGGACTGAGCAGAAGCAGCAACAGATGATGAAGTTCTTGGCTAGGGCAATGCAGAACCCCAACTTCTTGCAACAATTGGTTCAACAAAGGGAGTGGAGGAAGGAGCTGGAGGAAGCTTTTTCCAACAAGAGAATAAGAAGACCTGTTGATCAAGGGCCTAGTAGTGATGTTGAAGAATGCTCAGCTTTTGTTAAACTTGAACAGGAGGAGGAGTACAATGACATATCAGAGCTTGAGCTTGTTATGAACATAGGGGAACAATGTGGAAGCCAGAAGAACACTGACGAGGAGGAGAAAGCTGGAGCTGAACTTGAAAGTAGAAATGAAGGCATTGAAGAAGTACTCTGGGAAGAACTTTTGAATGAGGGTGCTGAAGAAGATCTACTAGGATTGGAAGATGATGATGAAGATATAACAGTGTTGGCTGAGGAACTTGGTTATTTAGCCTCAAGTCCTAAATAA 1032 0.4351 MSLITQLCSEEFPDEGVNIAPQPLEALHEIGPPPFLTKTYDIVDDGSTDEIVSWSRGNNSFVVWDPQAFSITLLPRYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEGFLRGQRHLLKNIRRRKTTHQQQPQPPQQALDSFVEVGRFGLDGEVDALRRDKQVLMVELVKLRQQQHNTRNHLQSMESRLKRTEQKQQQMMKFLARAMQNPNFLQQLVQQREWRKELEEAFSNKRIRRPVDQGPSSDVEECSAFVKLEQEEEYNDISELELVMNIGEQCGSQKNTDEEEKAGAELESRNEGIEEVLWEELLNEGAEEDLLGLEDDDEDITVLAEELGYLASSPK 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03670 343 PRINTS Heat shock factor (HSF) domain signature 86 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo3g03670 343 PRINTS Heat shock factor (HSF) domain signature 73 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo3g03670 343 PRINTS Heat shock factor (HSF) domain signature 35 58 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo3g03670 343 ProSitePatterns HSF-type DNA-binding domain signature. 74 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo3g03670 343 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 21 258 IPR027725 -
Pumo3g03670 343 SUPERFAMILY "Winged helix" DNA-binding domain 31 124 IPR036390 -
Pumo3g03670 343 FunFam Heat shock transcription factor 1 28 125 - -
Pumo3g03670 343 Pfam HSF-type DNA-binding 35 124 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo3g03670 343 Gene3D - 28 126 IPR036388 -
Pumo3g03670 343 Coils Coil 154 195 - -
Pumo3g03670 343 SMART hsfneu3 31 124 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03670 Pumo-Chr3 77526807 77530085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03670 21 341 HSF AT3G22830 56.389 2.98e-130 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pumo3g03670 HSF_DNA-bind 6.5e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03670 K09419 - gmx:100806789 455.292