Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03660 ATGACGGCACCGGTGGATAGAGGTCCAAACGCATGCAGGTTGTGCAACCAAGTTTTCACCAACACTCAGGCCCTTCTAACCCATGTTGAGTCTCACATGGCACAAGAAGATGTTGCAATTAGAAGGCTCTATTCATCACCACAAGTCAATCCTCATATGCATTTGAGTTCATATCAATTTCCACCTCAACCTATTAGTGGTGATGGTAGTAGGAATTTCCAAGCACAATCACAACCTATGGGGATGATGTCTCAGCCAATTAGTAGAAGCCCATTTTTCAATTCTAGCCAAATTGGCCCATCATCAATGCCAATTAGGCAAATGCAAGTTCCACCACCAGTTTTTCCATTTGCTGGGAGTATTAGTGGTGATGGCTCTAAGGCATATATCTCGAAGTTGGAGAAACCCATCAAAGAGATCGATTACATTGATTTGGTTAATGGGGATGATGACAACAACTCAAAGGTGGAAGCACTGGATTTGGATCTAAAGCTCTAG 498 0.4297 MTAPVDRGPNACRLCNQVFTNTQALLTHVESHMAQEDVAIRRLYSSPQVNPHMHLSSYQFPPQPISGDGSRNFQAQSQPMGMMSQPISRSPFFNSSQIGPSSMPIRQMQVPPPVFPFAGSISGDGSKAYISKLEKPIKEIDYIDLVNGDDDNNSKVEALDLDLKL 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03660 165 MobiDBLite consensus disorder prediction 68 99 - -
Pumo3g03660 165 ProSitePatterns Zinc finger C2H2 type domain signature. 12 32 IPR013087 -
Pumo3g03660 165 ProSiteProfiles Zinc finger C2H2 type domain profile. 10 37 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03660 Pumo-Chr3 77352445 77353541 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo3g03660 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03660 - K15623 pvu:PHAVU_007G277300g 159.844