Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03658 ATGGCCAACAACAACTTTTATAACGATGCAAAATTCCCTGAACTTTACAGCAACACAAGTCCAAACGCATGCAGGTTGTGCAACCAAGTTTTCACCAACACTCAGGCCCTTCTAACCCATGTTGAGTCTCACATGGCACAAGAAGAGGTTGCAATTAGAAGGCTCTATTCATCACCACAAGTCAATCCTCGTATGCATTTGAGTTCATATCAATTTCCACCTCAACCTATTGGGGGTGATGGTAGTAGGAATTTCCAAGCACAATCACAACCTATGGGGATGATGTCTCAGCCAACTAGTAGAAGCCCATTTTTCAATTCTAGCCAAATCGGCCCATCATTAATGCCAATTAGGCAAATGCAAGTTCCACCACCAGTTTTTCCATTTGCTGGAAGTATTAGTGGTGATGGCTCTAAGGCATATATCTCAAAGTTGGAGAAACCCATCAAGAAGATCGATTTCATTGATTTGGTTAATGGGGATGATGACAACAACTCAGAGGTGGAAGCACTGGATTTGGATCTAAAGCTCTAG 534 0.4232 MANNNFYNDAKFPELYSNTSPNACRLCNQVFTNTQALLTHVESHMAQEEVAIRRLYSSPQVNPRMHLSSYQFPPQPIGGDGSRNFQAQSQPMGMMSQPTSRSPFFNSSQIGPSLMPIRQMQVPPPVFPFAGSISGDGSKAYISKLEKPIKKIDFIDLVNGDDDNNSEVEALDLDLKL 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03658 177 ProSitePatterns Zinc finger C2H2 type domain signature. 24 44 IPR013087 -
Pumo3g03658 177 ProSiteProfiles Zinc finger C2H2 type domain profile. 22 49 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03658 Pumo-Chr3 77338469 77339002 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo3g03658 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03658 - K15623 pvu:PHAVU_007G277300g 168.703