Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03619 ATGCATGAGTTGCTGGGGAACAGGTGGTCAGCAATTGCAGCAAAATTACCTGGAAGAACTGACAATGAAATAAAAAATGTGTGGCACACCCACTTGAAGAAGAGGCTACTGAATTCAGATACCAAAAGTGTTTCCAAACCAAGAATCAAACGATCTGATTCCAATTCCAGCACACTAACTCAATCAGAACCTACATCATCATCACTATCAGCATGCACTACTTCTTCTAGTGATTTTTCATCATTTAGTGAAGGGACCAAAAACATGGACAACATGATCAAGAGTGAAGACATTGAGTCTGTGGAGACAATGCCTCCTCTAATTGATGAAAGCTTTTGGTCAGAGGCAACAGTGGATTATGAAAGCTCCACCATGATGCCATCATCAAATTCTTGGACAACTTCAAATGAATTAGCACCCCCTCATCAATACCAATTTAATTCAGTGGAAACCTTCCAACAACAAAGTTTTGGTTATAATGGTTCAAACTTTGATGATGGCATGGATTTCTGGTATGACATATTCATCAGATCAGGGGAGTCAATCGAATTGCCAGAGTTCTGA 564 0.3972 MHELLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLLNSDTKSVSKPRIKRSDSNSSTLTQSEPTSSSLSACTTSSSDFSSFSEGTKNMDNMIKSEDIESVETMPPLIDESFWSEATVDYESSTMMPSSNSWTTSNELAPPHQYQFNSVETFQQQSFGYNGSNFDDGMDFWYDIFIRSGESIELPEF 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03619 187 Pfam Myb-like DNA-binding domain 2 32 IPR001005 -
Pumo3g03619 187 MobiDBLite consensus disorder prediction 39 87 - -
Pumo3g03619 187 CDD SANT 1 32 IPR001005 -
Pumo3g03619 187 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 36 IPR017930 -
Pumo3g03619 187 SUPERFAMILY Homeodomain-like 2 39 IPR009057 -
Pumo3g03619 187 ProSiteProfiles Myb-like domain profile. 1 32 IPR001005 -
Pumo3g03619 187 MobiDBLite consensus disorder prediction 50 87 - -
Pumo3g03619 187 Gene3D - 1 65 - -
Pumo3g03619 187 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03619 Pumo-Chr3 76775897 76778022 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03619 1 184 MYB Transcription Factor Family AT3G23250 39.336 1.22e-30 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo3g03619 Myb_DNA-binding 5.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03619 K09422 - gmx:100806975 310.457