Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03611 ATGACAAGAAGAAGCTTCCGCGGCGTGCGGCGGCGGCCGTGGGGGAAGTTCGCGGCGGAGATAAGGGACTCCACGCGGCACGGCATAAGGGTGTGGCTTGGGACATTCGACAGCGCCGAGGCCGCGGCGCTGGCGTATGACCAAGCCGCGTTCTCCATGAGGGGCTCTGCCGCGGTGCTCAACTTCCCCGTGGAGAAGGTGAAGGAGTCACTAAGTGACATGAATTCTACTCTCTCTCAGCTTGATGGGTGTTCTCCTGTGGTAGCTTTGAAGAGGAAACACTCCTTGGGACGCAAAATGGCTGCCAAGAAGAAGAAGGTGGAAGAGAGTGATGATGTTAGGTTAGAGAATGTGGTTGTGTTTGAAGACTTAGGGGCAGAGTATTTGGAACAGTTGTTGATGTGCTCTGATGATACTAGATGTACTTGGTGA 432 0.544 MTRRSFRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSAAVLNFPVEKVKESLSDMNSTLSQLDGCSPVVALKRKHSLGRKMAAKKKKVEESDDVRLENVVVFEDLGAEYLEQLLMCSDDTRCTW 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03611 143 SMART rav1_2 5 69 IPR001471 GO:0003700|GO:0006355
Pumo3g03611 143 ProSiteProfiles AP2/ERF domain profile. 5 63 IPR001471 GO:0003700|GO:0006355
Pumo3g03611 143 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Pumo3g03611 143 CDD AP2 13 64 IPR001471 GO:0003700|GO:0006355
Pumo3g03611 143 PRINTS Ethylene responsive element binding protein signature 6 17 IPR001471 GO:0003700|GO:0006355
Pumo3g03611 143 PRINTS Ethylene responsive element binding protein signature 45 65 IPR001471 GO:0003700|GO:0006355
Pumo3g03611 143 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Pumo3g03611 143 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Pumo3g03611 143 PANTHER DNA-BINDING DOMAIN 4 134 IPR044808 GO:0003700|GO:0009873
Pumo3g03611 143 FunFam Ethylene-responsive transcription factor 2 4 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03611 Pumo-Chr3 75993227 75994175 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03611 2 143 AP2-EREBP Transcription Factor Family AT3G23240 68.056 4.14e-65 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo3g03611 AP2 9.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03611 K14516 - gmx:100780576 234.572
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02849 5 75715325 75716044 Pumo3g03611 3 75993227 75994175 PCT