Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03610 ATGATTAGCCCAAGCCAAGCATATTCAATGGAGGAGACCCAAAGGGAAAAGCATGACAAGTTGAAGGAGAAAAGAAGGGAGGAAGTCCGGTACCGCGGCGTCCGAAGGCGGCCGTGGGGCAAGTATGCGGCGGAGATCCGAGACCCTTCTAAGCAAGGGTCACGGTTGTGGTTGGGGACCTTTGAGACGGCTGAAGAGGCAGCTAGAGCATATGATCATGCAGCCTTTACCATGAGGGGTCGTGTTGCAATTTTGAATTTTCCTAATGAGTACCATTCTCATGTTAGGGGCTATTCTCCAAATTTAGCATCACCATCATCATCATCATCTTCCATTATTACTCTAGCCGGTGGTGGACAACAAAGGCAAGTTTTTGAGTTTGAGTATTTGGATGATAAGGTGTTGGAGGAGCTTCTTGAGTTTGAAGAGAAGAAGGCTCCCAAAGGTTGA 450 0.4778 MISPSQAYSMEETQREKHDKLKEKRREEVRYRGVRRRPWGKYAAEIRDPSKQGSRLWLGTFETAEEAARAYDHAAFTMRGRVAILNFPNEYHSHVRGYSPNLASPSSSSSSIITLAGGGQQRQVFEFEYLDDKVLEELLEFEEKKAPKG 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03610 149 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Pumo3g03610 149 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Pumo3g03610 149 SUPERFAMILY DNA-binding domain 30 89 IPR016177 GO:0003677
Pumo3g03610 149 MobiDBLite consensus disorder prediction 11 25 - -
Pumo3g03610 149 FunFam Ethylene-responsive transcription factor 2 29 89 - -
Pumo3g03610 149 Pfam AP2 domain 30 80 IPR001471 GO:0003700|GO:0006355
Pumo3g03610 149 PANTHER DNA-BINDING DOMAIN 16 142 IPR044808 GO:0003700|GO:0009873
Pumo3g03610 149 ProSiteProfiles AP2/ERF domain profile. 30 88 IPR001471 GO:0003700|GO:0006355
Pumo3g03610 149 CDD AP2 30 89 IPR001471 GO:0003700|GO:0006355
Pumo3g03610 149 Gene3D AP2/ERF domain 29 90 IPR036955 GO:0003700|GO:0006355
Pumo3g03610 149 MobiDBLite consensus disorder prediction 1 25 - -
Pumo3g03610 149 Coils Coil 10 30 - -
Pumo3g03610 149 SMART rav1_2 30 94 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03610 Pumo-Chr3 75962332 75962858 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03610 27 145 AP2-EREBP Transcription Factor Family AT3G23230 69.106 9.62e-49 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo3g03610 AP2 4.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03610 - - gmx:100814296 187.193