Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03609 ATGGACGAAGAGGGTTCAAGAGGAAAAGGCAAAGATGAAGATCAAGAGCATGTTAAGTACAGAGGGGTACGTAGGAGGCCATGGGGAAAATTTGCAGCAGAGATTCGTGACTCGATGAGACAAGGTCAAAGGTTGTGGCTTGGAACATTCAACACTGCAGAGGAAGCTGCTAGGGCCTATGATAGAGCTGCATATGCCATGAGGGGTCCCTTTGCTGTCCTCAATTTCCCTAATGAATACCCCCCTTTAGCACTTGGTGTTCCCTCCTCTTCTTCTTCTTCCAATACTTCTTCGGCTTCGGCTTCATCAGCATCTGCACCCTCTTCAAGTCATGGACATGTGGAAGGAAGAGGAAGAGGAGGAAGGAGTGAGCAAGCAAGTCAAGTGATTGAGCTTGAGTACTTTGATGACAAATTGTTGGAGGAGCTTCTTGGTTATGAAGACAAAAATAAACAAGACAAGTGA 465 0.4624 MDEEGSRGKGKDEDQEHVKYRGVRRRPWGKFAAEIRDSMRQGQRLWLGTFNTAEEAARAYDRAAYAMRGPFAVLNFPNEYPPLALGVPSSSSSSNTSSASASSASAPSSSHGHVEGRGRGGRSEQASQVIELEYFDDKLLEELLGYEDKNKQDK 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03609 154 MobiDBLite consensus disorder prediction 82 127 - -
Pumo3g03609 154 MobiDBLite consensus disorder prediction 85 110 - -
Pumo3g03609 154 Pfam AP2 domain 19 69 IPR001471 GO:0003700|GO:0006355
Pumo3g03609 154 SUPERFAMILY DNA-binding domain 19 78 IPR016177 GO:0003677
Pumo3g03609 154 SMART rav1_2 19 83 IPR001471 GO:0003700|GO:0006355
Pumo3g03609 154 MobiDBLite consensus disorder prediction 1 23 - -
Pumo3g03609 154 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Pumo3g03609 154 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Pumo3g03609 154 FunFam Ethylene-responsive transcription factor 2 19 78 - -
Pumo3g03609 154 Gene3D AP2/ERF domain 18 78 IPR036955 GO:0003700|GO:0006355
Pumo3g03609 154 ProSiteProfiles AP2/ERF domain profile. 19 77 IPR001471 GO:0003700|GO:0006355
Pumo3g03609 154 PANTHER DNA-BINDING DOMAIN 14 147 IPR044808 GO:0003700|GO:0009873
Pumo3g03609 154 CDD AP2 19 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03609 Pumo-Chr3 75941781 75942450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03609 14 151 AP2-EREBP Transcription Factor Family AT3G23230 50.000 9.31e-38 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo3g03609 AP2 2.8e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03609 - - gmx:100781117 210.305