Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03608 ATGTTAGTTGTCAAGTGCTGCCTCAATTGGCACCATGTTGATCATGTAAGGATTTTTTCTCTATCTAGGCATGGTGAAGACCCATCTGCAGCATACTCAGCAGCATCTGAGCCAAGAGGGCTAGAGGAATCAGTGATCAAATTAATCCCAGTGATTCATTACAAGCCAGAGGAAGGGGACACAGGCTTTGGTGAAAGAAGCTTTAGTACTGAGTGTTCAGTTTGCTTGAGTGAGTTTCAACAAGATGAGAAGCTGAGGGTTATACCAAACTGTAGCCATGTCTTTCACATTGATTGCATAGATGTTTGGCTTCAGAACAATGCTCATTGCCCACTTTGTAGAAGAACTGTTTCCTTGGCAAGCCAATTAGTCCATGTTGACCAAGTGAACCACCTTCTCACTCCAAGGCCTTCCCCTCAGGGCCAAAGCCAAAACAATGAAAACCTCATTGGTGCTGCTAATGAAGGAGGTTTTGTTGTGATTGATTTGGATGGTGAGCATGATAGAGACCAAAACTTGCAAGGAAGACAAGAAGAGTTACCAACATGTCCTATTGTTAGTCTTTCTTCACAAAGGAAGCTATTGGAGGAGAAGAAAGTGAGGAAGCTTAAAAAAGTGACCAGCATGGGAGATGAATGTATAGGTATTAGAGCCAAAGATGAAAGGTTATCAATTCAAGCTATGAGGAGGTCCTTTTCCATGGACTCATCAGTGGATAGAAAATTTTATGGGGCAGTTCAACAGGCTTTACAACAACAACAAAATGGGCATGTCCATGAGGTGAGCACAATTGAAGCTTTTGGTGGTAGTGGTAGAGTCAAGAGATCATTCTTTTCTTTTGGACATGGAAGCAGATCAAGAAGTGCTGTACTACCTGTTTATTTGGACCCCTGA 894 0.4239 MLVVKCCLNWHHVDHVRIFSLSRHGEDPSAAYSAASEPRGLEESVIKLIPVIHYKPEEGDTGFGERSFSTECSVCLSEFQQDEKLRVIPNCSHVFHIDCIDVWLQNNAHCPLCRRTVSLASQLVHVDQVNHLLTPRPSPQGQSQNNENLIGAANEGGFVVIDLDGEHDRDQNLQGRQEELPTCPIVSLSSQRKLLEEKKVRKLKKVTSMGDECIGIRAKDERLSIQAMRRSFSMDSSVDRKFYGAVQQALQQQQNGHVHEVSTIEAFGGSGRVKRSFFSFGHGSRSRSAVLPVYLDP 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03608 297 PANTHER RING-H2 FINGER PROTEIN ATL16 2 293 IPR044600 GO:0016567|GO:0016740
Pumo3g03608 297 SMART ring_2 72 113 IPR001841 -
Pumo3g03608 297 FunFam E3 ubiquitin-protein ligase ATL6 29 120 - -
Pumo3g03608 297 ProSiteProfiles Zinc finger RING-type profile. 72 114 IPR001841 -
Pumo3g03608 297 SUPERFAMILY RING/U-box 55 121 - -
Pumo3g03608 297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 119 IPR013083 -
Pumo3g03608 297 Pfam Ring finger domain 71 114 IPR001841 -
Pumo3g03608 297 CDD RING-H2_EL5-like 71 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03608 Pumo-Chr3 75924538 75926373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03608 1 297 C3H Transcription Factor Family AT1G04360 42.415 2.23e-65 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03608 - - gmx:100814827 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02846 5 75688237 75689442 Pumo3g03608 3 75924538 75926373 PCT