Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03607 ATGGATTCCATAGAAGACAGCGCCTGTTGGGATTTTCTCGATTACTCTTTCATCGATCACGCGCCCCCTGATTTCCTTTGGTCCAATAATAGTGTGAGCACCGAAATTGACATTCCAGGTGATGCTGTTGCTTGTCAAGAGAACACCAAGAAGAGGGGACGCACTGATTCATGCTGCAAGGCGGGATCAAAAGCTTGCCGTGAGAAATTGCGGAGGGAGAGACTCAATGAAAGGTTCTGTGACTTGAGCTCTGTTTTGGAGCCTGGGAGACCTGTGAGAACAGATAAACCAGCTATACTTGATGATGCTATCAGAGTCTTGAGCCAACTTAAAACCGAAGCTCAGGAGCTCAAACAAACAAATGAAAAATTATTAGAGGAAATAAAATGTTTAAAGGCAGAAAAAAATGAACTACGCGAAGAGAAACTTGTTCTGAAAGCAGTTAAGGAAAGGATTGAGAAGCAATTGAAAGCCTTGCCCATTGCACCAGCAGGGTTTATGGCTCCACCTGTAGCTGCTGCTGCTGCTGCATATCAAGCAGGGGTGAACAAGATGGCTGTTTATCCAAACTATGGCTATATCCCAATGTGGCAATATCTCCCTCAATCTGCCAGAGACACATCACATGATCATGAGCTCAGGCCTCCTGCTGCATAG 657 0.4521 MDSIEDSACWDFLDYSFIDHAPPDFLWSNNSVSTEIDIPGDAVACQENTKKRGRTDSCCKAGSKACREKLRRERLNERFCDLSSVLEPGRPVRTDKPAILDDAIRVLSQLKTEAQELKQTNEKLLEEIKCLKAEKNELREEKLVLKAVKERIEKQLKALPIAPAGFMAPPVAAAAAAYQAGVNKMAVYPNYGYIPMWQYLPQSARDTSHDHELRPPAA 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03607 218 Coils Coil 100 155 - -
Pumo3g03607 218 Gene3D - 62 143 IPR036638 GO:0046983
Pumo3g03607 218 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 137 IPR036638 GO:0046983
Pumo3g03607 218 Pfam Helix-loop-helix DNA-binding domain 63 110 IPR011598 GO:0046983
Pumo3g03607 218 FunFam Transcription factor bHLH104 62 143 - -
Pumo3g03607 218 PANTHER BHLH TRANSCRIPTION FACTOR 7 218 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Pumo3g03607 218 SMART finulus 65 116 IPR011598 GO:0046983
Pumo3g03607 218 CDD bHLH_AtILR3_like 64 139 - -
Pumo3g03607 218 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 59 110 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03607 Pumo-Chr3 75899643 75904239 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03607 49 218 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 67.251 1.17e-75 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo3g03607 HLH 3.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03607 - - gmx:100787583 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03607 3 75899643 75904239 Pumo3g03607 3 75899643 75904239 ECH