Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03600 ATGGCGGAAGAAGAACCTTCCATAACGTCACCACCGGCAGGAACGTTACACAAGTTCCTCTCCCGCAATGCCGTCGCCGCACAGCCTCTCACGGTGGTCCGCGCCACCACCAGCATCGGCGGCGCGCGCGTTCTCGCCGCGCCACCGACGACGGAGAATGAGGATCCAACACCGCCGCCGCAAGAACAAGAAGAAGGAGAAGGCGAAACCGGCTTCGACGTTTCTCTACCCTCGGCGCCGAAAGCAACGCAACAACAACAACGACACAAGTATTCGTTCGACGAGTTTCTCGTGGCCACGAACACGATAGTCGCGACCGCAGAGGAGGCTCTGAAATCGATGATGTCGCCGTTAGAAGAAACAGAAGAAGGAGAGGAAGTCGAATCGTCACCGGTTCAATCGGCGCAACCGGTGCAAAAGGAGTCACAACCGGTTCGACCGGTGCAGAAAAAAGCGGTTACCGGTGATGACGTCGTGGAGGTGGTGGAGGTGCGTAAGCCTGTGGAGAAGAGGAATATTCCGAATCTCGAGGACGGTGAGTTTCCGGAAGAGCCTGGGTGGTTCCTTCTCGGGAGGAAGGTTGAGGTTGCGGTTTCGACGGCCAGAGGAGTGAACAGATTGGTGGATAATGAAATCGTGCATTTCAATTTTCCTCTTCCGACTTACTCGAGTAAGACTCAGTGGATCGTTCGTGTTTCGACCAAGCGTTCTGGAGAGGTTGGGAGGATGCCAATGGAATGGGCAAAGACTGTGATTCCGGTTATGCAATCTGGAAAGGTTAAGGTTCGAGGCCGGTGCATTGCTGCCCCAGATAAACTGCAAATGATGCAAGAGATTATGTTTTTAGTGAGCTTTTATATTCACCACTCTTTATTTGCTGACCGTGTTGATACCTCTTGGAGGCTAGAGGCTTGTGGTAAAATTGATGATACTGTTTATCCGCTTCTTGGCCTTTTAAAAATGCTAGAGATCAAGCCAAGTCAAAAGGCTGAATTCACTCCTGAGGATATAGATTCTCGGAAGCGGTTGCTCTATCCAAAGGCTGATCCAGATGAAGCTGCAGCATTGCCTTTGATCAAGCGAAGAAAGGGTGGTGAGCCCCTTCCAGAGCAAAATAATGATGAACAAGCTCTTTCAGAGTCAGCTTTGAATAAACTTGTTGGAGCTGCAGAAATCTATGACCTCAAGGAGAAGGAAGCCCCAAAGGCACTTGTGTGTAATTTAAAGCCTTACCAGAAGCAGGCTTTATACTGGATGTCAGAAATAGAGAAAGGGATGGATATTGAGATTGCAGAAAGAAATCTTCATCCCTGCTGGTCAGCCTACACTATATGCAAGGGAAGGACGATTTATGTGAATATTTTTACTGGAGAGGCTTCGAAAAAGTTTCCAAAAGCAACGCAGATGGCAAGAGGAGGAATTCTAGCGGATGCAATGGGACTTGGAAAGACGGTTATGACAATTGCTTTGATACTCAGTAACCCAGGCAGGGGCAACTCAGAAAACAAGGATGTAGAGAATGGAGATGATAATATTATCACAAATAAAAGAAAGAATGCAAACACCTTGAATAAATTTGAGGGTGGCACTCTTATTGTTTGTCCCATGGCTTTGTTAGGTCAATGGAAGGATGAGCTTGAAACACATTCAAAGCCAGATAGTATATCCATATTTGTTCATTACGGTGGTGGAAGAACCACTGATCCATGGATGATCTCAGGGCATGATGTTGTCTTGACAACGTATGGTGTCCTATCAGCTGCATACAAAAATGATGGAGAGAATAGCATCTACCACAAGGTCCGGTGGTACAGGGTGGTGCTAGACGAAGCTCATAATATAAAAGCCCATCGGAATCAGACTGCCCATTCTGCTTTCACTCTGTCCTCACACAGCCGCTGGTGTCTAACTGGAACCCCGCTTCAGAATAGCTTGGAAGACCTATACAGTCTCTTGAGTTTCTTGCGTGTTGAACCTTGGTGCAACTGGGCATGGTGGCAGAAGTTGATTCAAAGGCCTTATGAGAATGGTGATCCAAGATCCCTGAAGTTGGTCAAGGCCATTTTGAGGATGCTGATGTTAAGAAGAACGAAGGAATCGAAGGATAAGGAAGGAAGGCCTATACTTTTCCTGCCTCCAATTGATATTCAATTGATTGAGTGTGAACAATCAGAATCTGAACGGGACTTTTATGAAGCCCTTTTCGTGAGATCTAAAGTTCAATTTGATCAGTATGTTGCACAAGGAAAGGTTCTTCACCATTATGCGAATATCCTTGACCTTCTAATGCAGTTGAGACGGTGTTGTAACCATCCATTTTTAGTTATGTGTGGAAGTGATTCCCAGAAATATGCAGACTTAAGCAGACTCGCAAGAAAATTCCTTCAGTCTAATACTGAATGCCCCGAAGAAAGCAATCAAAAAGATCCACAGCAGCAAGCAGAGTTGAACAAGCTTGCAAGCAGATTACTTCTAAAATCTGCTTCTTCTTCTCACTCTATTCAACCACATGCATACATTACCGAGGTTTTGGAGAATATTCAAAAGGGTGACATCGTAGAATGCTCTATATGTATGGAATCTCCAGAAGATCCTGTGTTTACACCATGTGCACATAAATTTTGTAGAGAATGTCTGTACAGTTGCTGGGGCACGTCATCGGGTGGCAAGTGTCCAATCTGTCGTCAATTGCTCCAGAAAGACGATCTGATTACTTGTCCATCTGAAAGCCCATTCAAGGTCGATATTAAGAACAATGTGACAGAGTCTTCAAAGGTTTCAAAGCTATTTGAATTCCTTCAACGTATTCTGAACACATCAAGTGAAAAGAGTATTGTCTTCAGTCAGTGGACTTCATTTTTTGATCTGTTGGAGAATCCATTGAGGAGGAGAGGAATTGGTTTTTTGAGATATGATGGGAAGTTGACTCAGAAACAGAGGGAGAAAGTTCTGGATGAATTCAATGTGACAAGAGAGAAAAGGGTTTTGTTGATGTCACTAAAAGCTGGTGGTGTGGGCTTGAACTTAACTGCAGCCTCAAATGTTTTCATTATGGATCCATGGTGGAATCCTGCAGTTGAGGAGCAAGCAATAATGAGAATTCATCGCATAGGACAAAACCGAAGAGTTGTAGTGAGAAGGTTCATTGTTAAGGACACAGTGGAAGATCGATTGCAACAAGTTCAAGCTAGGAAACAAAGGATGATATCTGGCACCCTCACAGACGATGAGGTTCGGACTGCTAGGATTCAAGACCTCAAAATGCTTTTCACATGA 3276 0.4515 MAEEEPSITSPPAGTLHKFLSRNAVAAQPLTVVRATTSIGGARVLAAPPTTENEDPTPPPQEQEEGEGETGFDVSLPSAPKATQQQQRHKYSFDEFLVATNTIVATAEEALKSMMSPLEETEEGEEVESSPVQSAQPVQKESQPVRPVQKKAVTGDDVVEVVEVRKPVEKRNIPNLEDGEFPEEPGWFLLGRKVEVAVSTARGVNRLVDNEIVHFNFPLPTYSSKTQWIVRVSTKRSGEVGRMPMEWAKTVIPVMQSGKVKVRGRCIAAPDKLQMMQEIMFLVSFYIHHSLFADRVDTSWRLEACGKIDDTVYPLLGLLKMLEIKPSQKAEFTPEDIDSRKRLLYPKADPDEAAALPLIKRRKGGEPLPEQNNDEQALSESALNKLVGAAEIYDLKEKEAPKALVCNLKPYQKQALYWMSEIEKGMDIEIAERNLHPCWSAYTICKGRTIYVNIFTGEASKKFPKATQMARGGILADAMGLGKTVMTIALILSNPGRGNSENKDVENGDDNIITNKRKNANTLNKFEGGTLIVCPMALLGQWKDELETHSKPDSISIFVHYGGGRTTDPWMISGHDVVLTTYGVLSAAYKNDGENSIYHKVRWYRVVLDEAHNIKAHRNQTAHSAFTLSSHSRWCLTGTPLQNSLEDLYSLLSFLRVEPWCNWAWWQKLIQRPYENGDPRSLKLVKAILRMLMLRRTKESKDKEGRPILFLPPIDIQLIECEQSESERDFYEALFVRSKVQFDQYVAQGKVLHHYANILDLLMQLRRCCNHPFLVMCGSDSQKYADLSRLARKFLQSNTECPEESNQKDPQQQAELNKLASRLLLKSASSSHSIQPHAYITEVLENIQKGDIVECSICMESPEDPVFTPCAHKFCRECLYSCWGTSSGGKCPICRQLLQKDDLITCPSESPFKVDIKNNVTESSKVSKLFEFLQRILNTSSEKSIVFSQWTSFFDLLENPLRRRGIGFLRYDGKLTQKQREKVLDEFNVTREKRVLLMSLKAGGVGLNLTAASNVFIMDPWWNPAVEEQAIMRIHRIGQNRRVVVRRFIVKDTVEDRLQQVQARKQRMISGTLTDDEVRTARIQDLKMLFT 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03600 1091 ProSiteProfiles Zinc finger RING-type profile. 855 895 IPR001841 -
Pumo3g03600 1091 Gene3D - 710 817 IPR027417 -
Pumo3g03600 1091 MobiDBLite consensus disorder prediction 128 143 - -
Pumo3g03600 1091 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 219 1091 - -
Pumo3g03600 1091 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 464 658 IPR014001 -
Pumo3g03600 1091 CDD RING-HC 854 894 - -
Pumo3g03600 1091 SMART ultradead3 404 675 IPR014001 -
Pumo3g03600 1091 MobiDBLite consensus disorder prediction 116 152 - -
Pumo3g03600 1091 ProSitePatterns Zinc finger RING-type signature. 870 879 IPR017907 -
Pumo3g03600 1091 SUPERFAMILY RING/U-box 839 901 - -
Pumo3g03600 1091 CDD SF2_C_SNF 917 1039 - -
Pumo3g03600 1091 Pfam Helicase conserved C-terminal domain 926 1038 IPR001650 -
Pumo3g03600 1091 Gene3D - 458 697 IPR038718 -
Pumo3g03600 1091 MobiDBLite consensus disorder prediction 41 87 - -
Pumo3g03600 1091 SMART helicmild6 955 1038 IPR001650 -
Pumo3g03600 1091 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 848 900 IPR013083 -
Pumo3g03600 1091 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 395 696 IPR027417 -
Pumo3g03600 1091 Pfam HIRAN domain 198 280 IPR014905 GO:0003676|GO:0008270|GO:0016818
Pumo3g03600 1091 CDD DEXDc_SHPRH-like 408 696 - -
Pumo3g03600 1091 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 931 1087 IPR001650 -
Pumo3g03600 1091 FunFam DNA repair protein RAD5B 461 697 - -
Pumo3g03600 1091 Pfam Zinc finger, C3HC4 type (RING finger) 853 898 - -
Pumo3g03600 1091 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 708 1081 IPR027417 -
Pumo3g03600 1091 Gene3D - 901 1089 IPR027417 -
Pumo3g03600 1091 SMART ring_2 855 894 IPR001841 -
Pumo3g03600 1091 Pfam SNF2-related domain 411 774 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03600 Pumo-Chr3 75805007 75811311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03600 143 1090 RAD5 or RAD16-like Gene Family AT5G43530 61.610 0.0 1214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pumo3g03600 SNF2_N 2.5e-80 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03600 K15505 - gmx:100806677 1884.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03600 3 75805007 75811311 Pumo3g03600 3 75805007 75811311 ECH