Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03581 ATGCTACTTACAAACGTGATAAAAATCACGAGAAAGATTCTTCCAAATAATGCAAAAATTTCAGACAATGCCAGGGAGATGATTCAACAAAGTCCTACAAAGTACATAACCTTTGTAACTAGAAAAGCCAAGGAGCTATGCCAAAGTGAGTATAGAAAAATTATGAATGTAGAGGATGTGTTATGGGCCATAGAGAACTTAGGCTTTGATGACTATGTTGGGCCTCTCACTATTTTCCTCCAACGCTATTGTAACGTTGAAGGAAGTGACCTCTTCTCTTGCCATGGGGAGCCCATTCCTTGCATTGACAACAATGGCCCTACTCTTGAGCCTGGGCCTAACCTTGTGCCGGTCTTGGAGATGCCTCTCCCTCCTTTACCACCACTAGTGCATTCTTTTGAGCCAGACTTTTCCATGGACCCAAGCACAAATATGGAAATGTTTGACCAAAATGACGTGAATGGATGTACCTAG 474 0.4241 MLLTNVIKITRKILPNNAKISDNAREMIQQSPTKYITFVTRKAKELCQSEYRKIMNVEDVLWAIENLGFDDYVGPLTIFLQRYCNVEGSDLFSCHGEPIPCIDNNGPTLEPGPNLVPVLEMPLPPLPPLVHSFEPDFSMDPSTNMEMFDQNDVNGCT 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03581 157 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 4 64 IPR003958 -
Pumo3g03581 157 Gene3D Histone, subunit A 3 90 IPR009072 GO:0046982
Pumo3g03581 157 PRINTS CCAAT-binding transcription factor subunit A signature 28 46 - -
Pumo3g03581 157 PRINTS CCAAT-binding transcription factor subunit A signature 47 65 - -
Pumo3g03581 157 PRINTS CCAAT-binding transcription factor subunit A signature 66 84 - -
Pumo3g03581 157 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 90 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pumo3g03581 157 SUPERFAMILY Histone-fold 4 86 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03581 Pumo-Chr3 75071324 75071797 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03581 1 94 CCAAT-HAP3 Transcription Factor Family AT5G47670 53.191 2.87e-32 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pumo3g03581 CBFD_NFYB_HMF 1.7e-13 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03581 K08065 - pda:103724115 126.716