Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03570 ATGGTAAACATGTTGCTCACAATGCTTATATGTCACCACTCACAGCAGGATGAGATTTCAAGCCCAATCAGTGCTCGAATTTTCGAACTTTGTGACCCCGATTTTTTCCCAGACACACTGCAAAATTCTGAGGTTACCTCCAGCTCCAATTGTTGCCATGAAGAGAAGTCCTCATATGCCACAACCATATCTCCACCTTTAGATGTAGTAGACAACAATAAGATCAATATCAATAGCAATAGCAACATAGTCACCACCACCTCATCTAGCACAACCACAAGCAGCACCACGACCAACAACAACAACATCAACATCTACAACAACAACAACAACAACAACAACAACAACAATGCAACAAACAGCAATAACCTGCCCATCTTCTTTGACTCTCAAGATGAAATTGACAATGACATCTCAGCCTCCATAGACTTCTCATCATCTCCATCTTTTGTTGTTCCACCACTTCTCCCAATCTCAACTCAGCAGGATCAGTTTGATTTCTCTTCACAGGTGCAACTATCAGGAGCAGGTTCAGTTTTGAAGGGCCTCTCTCAGTACCCTACTGATCCTGTGATTGCACCCCTTATTGGGGCTCCATTACCATCTGTTTTTGATGATGATTGCATATCTTCCATCCCTTCTTATGTGCCTCTCAACCCTTCATCACCCTCTTGCTCTTATCTCAGTCCTGGCATAGGAGTGTACATGCCTCCTCCTGGTTCCCTTAACACTGCCTTATCTGCTGACAGTGCTGGATTGTTTGGTGGGAACATCCTACTGGGGTCTGAACTGCAGGCACAAGAACTGGACTACCAGGGAGAAAATGGTGGAATATATTGTACAGATTCAATTCAGAGGGTGTTTAACCCCCCAGACCTTCAGGCACTTGGTACTGAGAGTCAAAAACTTGTAGCTGGGGCTGGAAGTTCTGCCACTTTGGCACCAGAAACCTCACACTTGGAGGACTCTACCTTGAAGGTTGGAAAACTCTCTGTTGAGCAGAGGAAGGAAAAGATTCATAGATACATGAAGAAGAGAAATGAAAGAAATTTCAGCAAGAAAATCAAGTATGCTTGCCGCAAAACTTTGGCGGATAGCCGGCCCCGGGTTAGAGGAAGGTTTGCAAAGAATGATGACTTTGGAGAGAGCCATAGACAAGGAAGTAGCAATCATGAAGAGGATGATGAAGAAATAATTGTGAAAGAAGATGATGATATGGTTGATTCCTCAGATATCTTTGCACATATCAGTGGGGTGAACTCTTTCAAATGCAACTATTCCATCCAGTCCTTGATTTGA 1299 0.4357 MVNMLLTMLICHHSQQDEISSPISARIFELCDPDFFPDTLQNSEVTSSSNCCHEEKSSYATTISPPLDVVDNNKININSNSNIVTTTSSSTTTSSTTTNNNNINIYNNNNNNNNNNNATNSNNLPIFFDSQDEIDNDISASIDFSSSPSFVVPPLLPISTQQDQFDFSSQVQLSGAGSVLKGLSQYPTDPVIAPLIGAPLPSVFDDDCISSIPSYVPLNPSSPSCSYLSPGIGVYMPPPGSLNTALSADSAGLFGGNILLGSELQAQELDYQGENGGIYCTDSIQRVFNPPDLQALGTESQKLVAGAGSSATLAPETSHLEDSTLKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGESHRQGSSNHEEDDEEIIVKEDDDMVDSSDIFAHISGVNSFKCNYSIQSLI 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03570 432 MobiDBLite consensus disorder prediction 373 395 - -
Pumo3g03570 432 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 121 393 IPR045281 GO:0009909
Pumo3g03570 432 MobiDBLite consensus disorder prediction 373 397 - -
Pumo3g03570 432 Pfam CCT motif 335 377 IPR010402 GO:0005515
Pumo3g03570 432 ProSiteProfiles CCT domain profile. 335 377 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03570 Pumo-Chr3 74651725 74654604 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03570 314 383 C2C2-CO-like Transcription Factor Family AT5G24930 42.857 2.07e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo3g03570 CCT 5.8e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03570 - - gmx:100793417 642.499