Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03569 ATGGACCGGTCTCCGGCGAAGTTCCGGAAGAGCCCGTCGTGTCCCGGAAGCTCTGGTCTCCTCTTCGAGAAGCGTTTGATTGAGCGACACATCTCGGATTATGGGAAGTGTCCAATTACTGGAGAACCACTTACTCTGGATGACATTGTACCAATCAAGACAGGCAAGATAGTGAAGCCCAGACCTGTTCAGGCAGCTAGCATCCCTGGCATGCTGGGAATGTTCCAAAATGAATGGGATGGATTGATGCTATCTAATTTTGCATTGGAGCAACAATTGCACACAGCAAGGCAAGAGTTAAGTCATGCTCTGTATCAGCATGATGCTGCTTGCCGAGTTATTGCAAGGCTTAAAAAGGAACGAGATGAAGCTAGGTCTTTACTTGCACAAGCAGAAAGGCAGTTCCCTGTTTCTGCACCAAATGCCGTAACAGCAAATGCCCTTGTCCTGAGCAACGGGAAAAGAGCTGCTGAGGATGACGAATTGGCACCTGGTGCAAAGAAAATTCATCCTGGAATATCTTCTACAGTAATTTCTGAGCTAACCGACTGCAATGCTGCTCTTTCCCAACAGAGGAAGAAGCGACAGATTCCTGCAACTTTGGCTCCTATTGAAGCTCTAGAGGCATATACCCAGATATCTAGTCATCCCTTTCACAAAACAAACAAACAAGGCATTGTATCTCTTGATATCCTTTATTCTAAGGACTTAATTGCAACTGGAGGTATTGATACAAATGCTGTTATTTTTGACCGACCATCAGGACAGATATTATCTACACTCAGTGGTCACTCTAAAAAGGTGACCAGTGTAAAATTTGTAGCTCAGGGTGAATCATTCTTAACTGGTTCAGCAGATAAGACAGTGCGTCTATGGCAAGGGTCAGATGATGGTAACTATAACTGCAGGCACATCTTAAAGGATCATACAGCTGAGGTGCAAGCTGTCACTGTCCATGCAACCAATAATTACTTTGTGACTGCTTCACTTGATGGCTCTTGGTGCTTTTATGATCTTTCTTCAGGGACATGTCTGACTCAGGTTTTTGACGCTTCAGGTACTTCTGAAGGCTACACATCTGCAGCTTTTCATCCCGATGGTCTCATTCTTGGCACTGGGACCACAGAATCTCTTGTCAAGATTTGGGATGTAAAAAGTCAGGCAAATGTTGCTAGGTTTGATGGGCATGCTGGGCCAGTAACTGCCATATCTTTTTCTGAGAATGGATACTTCCTTGCGACTGCTGCTCATGATGGCGTTAAGCTTTGGGATCTACGTAAATTGAAGAACTTCAGGAATTTTGCTCCATATGATTCGGAAACACCAACAAACTCCGTGGAGTTTGACCACAGTGGATCCTACCTAGCAATTGCTGGCTCTGATATAAGGATTTACCAAGTTGCAAATGTGAAATCTGAATGGAACTGTATCAAAACCTTCCCTGATTTATCCGGAACAGGGAAGAACACGTGTGTAAAATTTGGTCCAGATTCTAAATACATTGCAGCGGGATCAATGGACCGGAATCTTCGAATATTCGGCTTGCCGGGCGAAGATGCTCCTACTGAGTCATAA 1575 0.4451 MDRSPAKFRKSPSCPGSSGLLFEKRLIERHISDYGKCPITGEPLTLDDIVPIKTGKIVKPRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQFPVSAPNAVTANALVLSNGKRAAEDDELAPGAKKIHPGISSTVISELTDCNAALSQQRKKRQIPATLAPIEALEAYTQISSHPFHKTNKQGIVSLDILYSKDLIATGGIDTNAVIFDRPSGQILSTLSGHSKKVTSVKFVAQGESFLTGSADKTVRLWQGSDDGNYNCRHILKDHTAEVQAVTVHATNNYFVTASLDGSWCFYDLSSGTCLTQVFDASGTSEGYTSAAFHPDGLILGTGTTESLVKIWDVKSQANVARFDGHAGPVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRNFAPYDSETPTNSVEFDHSGSYLAIAGSDIRIYQVANVKSEWNCIKTFPDLSGTGKNTCVKFGPDSKYIAAGSMDRNLRIFGLPGEDAPTES 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03569 524 CDD WD40 225 513 - -
Pumo3g03569 524 ProSiteProfiles U-box domain profile. 1 69 IPR003613 GO:0004842|GO:0016567
Pumo3g03569 524 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 261 293 - -
Pumo3g03569 524 PANTHER PRE-MRNA-PROCESSING FACTOR 19 17 515 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Pumo3g03569 524 FunFam Pre-mRNA-processing factor 19, putative 8 57 - -
Pumo3g03569 524 FunFam pre-mRNA-processing factor 19 198 515 - -
Pumo3g03569 524 SMART WD40_4 254 293 IPR001680 GO:0005515
Pumo3g03569 524 SMART WD40_4 299 338 IPR001680 GO:0005515
Pumo3g03569 524 SMART WD40_4 211 251 IPR001680 GO:0005515
Pumo3g03569 524 SMART WD40_4 342 383 IPR001680 GO:0005515
Pumo3g03569 524 SMART WD40_4 386 424 IPR001680 GO:0005515
Pumo3g03569 524 SMART WD40_4 473 514 IPR001680 GO:0005515
Pumo3g03569 524 SMART WD40_4 427 466 IPR001680 GO:0005515
Pumo3g03569 524 SUPERFAMILY RING/U-box 10 52 - -
Pumo3g03569 524 SMART Ubox_2 7 65 IPR003613 GO:0004842|GO:0016567
Pumo3g03569 524 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 351 386 - -
Pumo3g03569 524 Pfam WD domain, G-beta repeat 389 424 IPR001680 GO:0005515
Pumo3g03569 524 Pfam WD domain, G-beta repeat 255 292 IPR001680 GO:0005515
Pumo3g03569 524 Pfam WD domain, G-beta repeat 475 513 IPR001680 GO:0005515
Pumo3g03569 524 Pfam WD domain, G-beta repeat 301 338 IPR001680 GO:0005515
Pumo3g03569 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 306 347 IPR001680 GO:0005515
Pumo3g03569 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 393 433 IPR001680 GO:0005515
Pumo3g03569 524 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 393 426 - -
Pumo3g03569 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 351 392 IPR001680 GO:0005515
Pumo3g03569 524 Coils Coil 114 134 - -
Pumo3g03569 524 Gene3D - 201 515 IPR015943 GO:0005515
Pumo3g03569 524 Pfam Prp19/Pso4-like 65 130 IPR013915 -
Pumo3g03569 524 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 59 IPR013083 -
Pumo3g03569 524 SUPERFAMILY WD40 repeat-like 220 513 IPR036322 GO:0005515
Pumo3g03569 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 261 293 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03569 Pumo-Chr3 74613942 74621957 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03569 10 524 U-box Gene Family AT1G04510 74.563 0.0 792
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03569 K10599 - gmx:100527039 995.342
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03569 3 74613942 74621957 Pumo3g03569 3 74613942 74621957 ECH