Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03566 ATGGCGACCCAAATGAGCAAGAAGAGAAAGTTCGTAGCTGATGGAGTGTTCTTCGCTGAGCTGAACGAGGTTCTGACAAGAGAGTTGGCCGAGGACGGTTACTCCGGCGTGGAAGTTAGGGTTACGCCAATGCGCACCGAAATCATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGGTGAGAAGGGAAGGAGAATCAGGGAACTTACCTCGGTGGTTCAGAAGAGGTTCAAGTTTCCAGAGAACAGCGTTGAACTTTATGCTGAAAAAGTCAACAATAGGGGTCTTTGCGCTATTGCTCAGGCTGAGTCTCTCCGCTACAAGCTCCTTGGTGGACTCGCTGTGCGCAGGGCTTGCTATGGTGTTTTGAGGTTTGTTATGGAGAGTGGTGCCAAGGGATGCGAGGTCATTGTGAGTGGAAAATTGAGAGCCCAGAGAGCCAAATCTATGAAGTTTAAGGATGGGTACATGATTTCTTCTGGGCAACCTGTCAAGGATTACATTGACTCTGCAGTGAGACACGTGCTCCTCAGACAGGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGGAAACAGGGTCCTAAAACCCCCCTCCCTGATCTTGTCACAATCCATTCTCCAAAGGAGGAAGAGGAATACATCCAACCTGCTCCAGTTTTGGCTGCTAATGATATTGAGGTCCCTGTCGTTTGA 711 0.4937 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHSPKEEEEYIQPAPVLAANDIEVPVV 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03566 236 ProSitePatterns Ribosomal protein S3 signature. 147 183 IPR018280 -
Pumo3g03566 236 Gene3D - 93 219 IPR036419 -
Pumo3g03566 236 CDD KH-II_40S_S3 5 95 - -
Pumo3g03566 236 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 6 198 - -
Pumo3g03566 236 SUPERFAMILY Ribosomal protein S3 C-terminal domain 93 191 IPR036419 -
Pumo3g03566 236 NCBIfam 30S ribosomal protein S3 8 211 IPR005703 GO:0003735|GO:0006412|GO:0015935
Pumo3g03566 236 FunFam 40S ribosomal protein S3 1 92 - -
Pumo3g03566 236 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 99 IPR009019 GO:0003723
Pumo3g03566 236 Pfam KH domain 20 93 IPR004044 GO:0003723
Pumo3g03566 236 FunFam 40S ribosomal protein S3 93 228 - -
Pumo3g03566 236 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
Pumo3g03566 236 Pfam Ribosomal protein S3, C-terminal domain 106 188 IPR001351 GO:0003735|GO:0006412
Pumo3g03566 236 Gene3D - 1 91 IPR015946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03566 Pumo-Chr3 74591996 74594265 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03566 1 226 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 89.823 2.66e-152 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03566 K02985 - gmx:100799156 461.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03566 3 74591996 74594265 Pumo3g03566 3 74591996 74594265 ECH