Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03561 ATGTTAACTACCATCTTCACCTTAGATTCTCTGAACAACCTTTCCTTTTTGGAGGAGATTATTGTTGAAGACTGTCCAAAAGTAACCACCCTGATAAGTCATGATTCACCAGAACAAAAACCAGTGTTTTTCCTCCCCAAGTTGAGAATGATATCGCTTCTCTATCTTCCTGAATTGGTCAACATTTTTAATGGCCTGCATGTTGGACATGTTTTAGAAGAAATGATATTTTATTATTGCCCAAAACTCCAAAGTCTTTCCAAATCAGAGTTGTCAGTCAAATCTTTGAAGATCATCAAAGGAGAAAGCATCTGGTGGGAAGCATTGAAATGGAATGTAGTAGAGTGGGGAGATGCTGGTCGACCCAAATTTTTTGAGCGAATATTTTCACCAATTAACGAGGAGGCTGACATGGTGAACCAACTGGCTGCACATCAAGAGACTCAACTAAATGAATATCAGGGAATTTCAAGTTCTACACAGTTGATGGCAAAGTCATCTTTGGAAACACCTATTTTGACACCTTTAACCCCAGTGTCGTTATTGGGTTCAAAAGGTGAAGCCCAAAAGCAGAAAGCCGTTACGGAGCCAAAAATAGTTCAAGCGGTATCAAAGCAGGGAATTTCAAGTTCTACACAGTTGATGGCAAAGTCATCTTTGAAAACACCTGTTTTGACACCTTTAGCCCCAGTTTCGTTATTGGGTTCAAAAGGTGAAGCCCAAAAGCAGAAAGCCGTTAAGGAGCCAAAAATAGTTCAAGTGGTATCAAAGCAGGTTTGTGAAGGAAGAACAGATCACACTGAAGCTGTGAAAGTACTGATACATGACAATGGACAAGGGTGTTTAGATGATGGATATCACTGGAGAAAATATGGGAAAAAGAATGTTCTTGGAGCTAAGTTTCCAAGAGAGTATTACAGATGCTCACATGGAGGTGTACAAGGGTGCCCGGCAAAAAAAAGAGTTCAAAGGTCAGATGAAGACCCAACAAAAATTGAGGTGACCTACGAAGGGAAACATACATGCACCAAAGAACAGAATTTGATCATTGAAAGTGGGGTTGAAGCCAAATTTGAAGAACAGAATAGTGATAGAACAAGAACAGAATCATAA 1113 0.3971 MLTTIFTLDSLNNLSFLEEIIVEDCPKVTTLISHDSPEQKPVFFLPKLRMISLLYLPELVNIFNGLHVGHVLEEMIFYYCPKLQSLSKSELSVKSLKIIKGESIWWEALKWNVVEWGDAGRPKFFERIFSPINEEADMVNQLAAHQETQLNEYQGISSSTQLMAKSSLETPILTPLTPVSLLGSKGEAQKQKAVTEPKIVQAVSKQGISSSTQLMAKSSLKTPVLTPLAPVSLLGSKGEAQKQKAVKEPKIVQVVSKQVCEGRTDHTEAVKVLIHDNGQGCLDDGYHWRKYGKKNVLGAKFPREYYRCSHGGVQGCPAKKRVQRSDEDPTKIEVTYEGKHTCTKEQNLIIESGVEAKFEEQNSDRTRTES 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03561 370 SMART WRKY_cls 282 344 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo3g03561 370 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 145 344 IPR044810 GO:0003700
Pumo3g03561 370 Gene3D WRKY domain 267 344 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo3g03561 370 SUPERFAMILY WRKY DNA-binding domain 280 343 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo3g03561 370 Gene3D Ribonuclease Inhibitor 1 109 IPR032675 -
Pumo3g03561 370 ProSiteProfiles WRKY domain profile. 277 345 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo3g03561 370 Pfam WRKY DNA -binding domain 283 342 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03561 Pumo-Chr3 74531592 74537260 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03561 215 344 WRKY Transcription Factor Family AT4G11070 41.221 2.34e-23 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo3g03561 WRKY 5.8e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03561 - - vum:124825720 347.821