Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03509 ATGGATGGAGCAGAAGAGTATCCTTTCTTAGGATACAAACAGTTCTCCTCTATTGTCTGGGATAATGGGACCAGCAATGCATCTTTATTTTGCCAAGAGATTTTAATCAATGTTCCTTCAATTCTTATTTTAGATGAGGGACACTATCCTAGGAATGATAACACAGATATGGTACAGTCCCTTGCAAAAGTTCAAATGCCTAGAAAAGTTGTACTGTCAGGAACCCTTTATCAAAATCATGTCAGGGAGGTGTTCAACATTTTAAATCTTGTTCGCCCAAAATTTTTGGAGATGGAAACATCTATGCCTATATTGAGACGCATTCATAGTAGAGTTCCCATACCACGGGTGACAAGCTTCTATGATTTAGTTGAAAACACTTTGCAAAAGGACGCAGATTTTCAAACGAAAGTAGCTGTTATAAAAGATTTGCGTGAGATGATGAGCAAGGTACTTCACTATTACAAAGGAGATTTTCTTGATGAGGTTCCTGGTCTTGTTGATTTTACTGTGGTGCTCAACCTTAGCTGTAGTCAACGGTGTAGAGTTGAGAAATTAAAAAGTCTATCTACAGAGTTCAAGATAATTAGTTCTGTAGGCAGTGCTATCTATCTGCATCCTGAACTAATACAGTACTATTTTGGTGAAAAATCTGTATCTGATAAGACAATGGATGATTTGATAGAGAATCTTGATATGAGCGATGGTGTGAAGTCAAAATTCTATTACAACATGCTAAATCTGTGTGAATCAGCCAGGGAGAAGCTTCTAGTTTTTAGTCAATATCTGTTACATTTGAAATATTTGGAGAGGTTGACTATGAAATGGAAAGGCTGGAGTCTTGGAAGAGAAATTTTTGTAATCGCAGGAGAATCGAGAACTGAGACCCGACAATGGTCCAAAAAAATCTTTAACAATTCTCCTGATGCCAAAGTCTTCTTTGGCTCAATCAAGGCATGTGGAGAGGGCATATCTTTGGTTGGGGCATCTCGCATAATTATTTTGGATGCTCATCTCAACCCATCAGTTACTCGTCAAGCTATTGGTCATGCATTCAGACCAGGCCAGATGAGGAAGGTGTCTGTGTATCGTTTGGTATCTGCAGATTCTCCAGAAGAGGAAGATCACAGAACTTGTTTCAAGAAGGAATTGATTTCAAAAATGTGGTTTGAATGGAACGAGTATTGTGGTGATCATGCTTTTGAAGTTGACGCGGTTGGGGTGAAAGAGTGTGGTTATCTCCTTCTTGAAAGTCCACTGTTAGCGGAGGATGTTAAAGCTTTGTATAAAAGGTATAATGTGGCTTTCAATGGGCATTGGCAAGCAATTTTTTTTGCTGTTATGTGA 1347 0.386 MDGAEEYPFLGYKQFSSIVWDNGTSNASLFCQEILINVPSILILDEGHYPRNDNTDMVQSLAKVQMPRKVVLSGTLYQNHVREVFNILNLVRPKFLEMETSMPILRRIHSRVPIPRVTSFYDLVENTLQKDADFQTKVAVIKDLREMMSKVLHYYKGDFLDEVPGLVDFTVVLNLSCSQRCRVEKLKSLSTEFKIISSVGSAIYLHPELIQYYFGEKSVSDKTMDDLIENLDMSDGVKSKFYYNMLNLCESAREKLLVFSQYLLHLKYLERLTMKWKGWSLGREIFVIAGESRTETRQWSKKIFNNSPDAKVFFGSIKACGEGISLVGASRIIILDAHLNPSVTRQAIGHAFRPGQMRKVSVYRLVSADSPEEEDHRTCFKKELISKMWFEWNEYCGDHAFEVDAVGVKECGYLLLESPLLAEDVKALYKRYNVAFNGHWQAIFFAVM 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03509 448 SMART helicmild6 270 355 IPR001650 -
Pumo3g03509 448 Gene3D - 173 406 IPR027417 -
Pumo3g03509 448 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 244 404 IPR001650 -
Pumo3g03509 448 CDD SF2_C_SNF 244 366 - -
Pumo3g03509 448 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 9 431 IPR044567 GO:0080188
Pumo3g03509 448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 393 IPR027417 -
Pumo3g03509 448 Pfam SNF2-related domain 40 98 IPR000330 GO:0005524|GO:0140658
Pumo3g03509 448 Gene3D - 18 111 IPR038718 -
Pumo3g03509 448 Pfam Helicase conserved C-terminal domain 246 354 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03509 Pumo-Chr3 71511663 71513097 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03509 252 373 RAD5 or RAD16-like Gene Family AT1G11100 35.246 3.57e-11 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pumo3g03509 Helicase_C 2.6e-06 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03509 K10875 - gmx:100780454 686.411