Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03503 ATGGCGGTTTCTTCTTCTGCAAAATGGGTCCTCTTCTTGCTTCTGGCGCTGCTCATTCGAGAAGAAGCCATGGCCATGGCTACCCCACAGATCTCTGACCTCAGGAATGGTGAAGTTGAAAGACACAGGTTGCCGAGCTTGACGAACTCGTCAATGGCGGAGAGGGCAAAAGAGGCTGAGAAATTAAATGAACAAGCTGCAGTGGCTAACCCAGAGGAAGTGGTTTCAATGGTTGAGATGAGCATCCAGAACAGCACAGAGAGAAGGAAGCTGGGGTTTTTCTCTTGTGGAACTGGTAACCCCATTGATGATTGCTGGCGTTGTGACCCCAACTGGCAACGCAACAGGAAGCGTCTTGCAGATTGTGGCATTGGTTTTGGCAGAAACGCCATCGGTGGCCGCGATGGAAAGTTCTATGTGGTGACTGACCCCAGAGATGATGACCCTGTGAACCCAAAACCCGGCACTCTTCGCCATGCTGTGATCCAGGACAGGCCCTTGTGGATTGTGTTCAAGAGGGACATGGTTATTCAGTTGAAGCAAGAGCTAATCGTGAACAGCTTCAAGACCATTGATGGGAGAGGAGTCAATGTGCACATTGCTAATGGGGCATGCATCACAGTTCAGTTTGTTACCAATGTCATCATCCATGGCCTGCATATTCATGATTGCAAACCCACTGGGAATGCCATGGTGAGGAGCTCCCCAACCCACTTTGGGTGGAGGACAATGGCTGATGGAGATGCCATCTCCATATTTGGCTCAAGCCACATTTGGGTTGACCACAACTCATTGTCACACTGTGCTGATGGCCTTGTGGATGCTGTCATGGGCTCAACAGCCATAACTATTTCCAACAACCACTTCACCCACCACAATGAGGTGATTCTGCTGGGCCACAGTGACTCTTACACAAGAGACAAGCAAATGCAAGTGACCATCGCATACAACCATTTCGGAGAGGGACTTATCCAGAGAATGCCACGGTGTAGACATGGATATTTTCACGTGGTGAACAATGACTACACTCACTGGGAGATGTATGCTATTGGTGGAAGTGCTAACCCCACCATCAACAGCCAGGGCAACCGATACAATGCTCCTGTTAACCCTTTTGCCAAGGAGGTGACTAAGAGAGTGGAAACAGCAGAAAGTCAGTGGAAGGGTTGGAATTGGAGGTCAGAGGGAGATTTGTTGCAGAATGGTGCCTATTTCACCCCATCTGGTGCTGGAGCCTCAGCCAGCTATGCCAGGGCCTCTAGCTTAGGAGCAAAATCTTCTTCCATGGTTGGTTCCATGACTTCCAATGCTGGTGCACTTGGTTGCAAAAGAGGCCGTCAGTGCTAG 1347 0.4989 MAVSSSAKWVLFLLLALLIREEAMAMATPQISDLRNGEVERHRLPSLTNSSMAERAKEAEKLNEQAAVANPEEVVSMVEMSIQNSTERRKLGFFSCGTGNPIDDCWRCDPNWQRNRKRLADCGIGFGRNAIGGRDGKFYVVTDPRDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIVNSFKTIDGRGVNVHIANGACITVQFVTNVIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHFTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPVNPFAKEVTKRVETAESQWKGWNWRSEGDLLQNGAYFTPSGAGASASYARASSLGAKSSSMVGSMTSNAGALGCKRGRQC 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03503 448 SUPERFAMILY Pectin lyase-like 74 442 IPR011050 -
Pumo3g03503 448 PANTHER PECTATE LYASE 18-RELATED 61 446 IPR045032 GO:0030570
Pumo3g03503 448 SMART amb_all 174 371 IPR002022 -
Pumo3g03503 448 FunFam Pectate lyase 99 441 - -
Pumo3g03503 448 Gene3D - 99 441 IPR012334 -
Pumo3g03503 448 Pfam Pectate lyase 180 363 IPR002022 -
Pumo3g03503 448 PRINTS Pollen allergen Amb family signature 182 198 IPR018082 -
Pumo3g03503 448 PRINTS Pollen allergen Amb family signature 246 267 IPR018082 -
Pumo3g03503 448 PRINTS Pollen allergen Amb family signature 146 171 IPR018082 -
Pumo3g03503 448 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Pumo3g03503 448 PRINTS Pollen allergen Amb family signature 348 367 IPR018082 -
Pumo3g03503 448 PRINTS Pollen allergen Amb family signature 419 442 IPR018082 -
Pumo3g03503 448 PRINTS Pollen allergen Amb family signature 122 139 IPR018082 -
Pumo3g03503 448 PRINTS Pollen allergen Amb family signature 390 414 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03503 Pumo-Chr3 70522634 70528655 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03503 34 448 Polysaccharide Lyase AT4G13710 79.108 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03503 K01728 - gmx:100781845 873.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03503 3 70522634 70528655 Pumo3g03503 3 70522634 70528655 ECH