Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03500 ATGGCAGAGGATATGAAAATTGATCATATTGTGGAAGTTCCTGATACCCCAGATAGAATAACTGTAAGGCCTGATGATCAGAAATATTTAGGTAATCCTGAGAAGAGGGGGAGAGCTTTTAATGCTGCTGATGAAAAGAATAACCACAGTAACTATATAACATTGTCCCCGTCAGAGGAATCTCATCCTTCTCAAAATGCTCCCATCTTTAGGAGAGCCCAAACTGAGAAAATTCTTGAACTTGGGGCAACACATTCTAATGGAGCTGAAAAGATGGATAAAGGGAAAAGTATAAGCTCCAAGGTTCCTTCTAAATCATCTCACAGTGGTATTTCTGTTTTAGATTTGACTGAAGAGAATGGACAATTCCGACCACTGAAACCAGCTTTCTCACATCGTGGAACAAGAGATAATGCAACTGAAGACAAGAATGCACTGAAAGAAACTGTTGGGAACTCTTCATTGCCATTTGTTGCCGATTCCTCTAATACATCTAGAAATGCCTTCACTGGAAAGTGTAAACTAGATAATAAAACACTTCCAGGTCCTAATATATCTGTGGACCGTGGCAAGGGTATTTCTCTGTCTAATGATTCTCGATCACAAAATGAAAAGCAAGTGTCTTTGCCTCCTCGTGTTTCCACCTCTCCACGAGGTAGAGGGCACAAGAGATTGGTACGAAATGGATGCATTTCACCTCATAATATTGCAACCAGGGAAAAACAATTAGCTGAACAGAGCAACCATCAAACCATAGATGTTGAACAGAATCATGCTGGTCGTTCGGTTTCTAGCAATACAGTGTCACCGAATAGTGTTGATGACATAGTTGCTGGAGACAGAGGCAATGGTAGGGTGAAAGGAAAGGAAGTACTTAGTCATCCTTCACCACAAAGACATACTTTCCGCACTGCTAGCAGCAGACCTGTGACCAATTATGAAGAGATCAATGGAACCATTAATGCTATAAGAAATTCTCTTCAATACTCTGGAGGACAAGGTGGTTGGAGAACTACACATGAGAGGAATGTTGATCGGCACTCGTATGATGCAAATGGGCATCATTCGAGGAGAAATAATGATGTTGGAAGGTTTAATAATAGGCAGAATACAAACAGAATGGACAGAAGAAACACTGGGAGTGGTTCTCAATCAGATCATACAGCTCAACCAACTTCTGTGATCATTCCAGATGTGGACCAGTCATCTGGAACCCGTCCTACTGCTGACATTCTGACTAAAAGGCAAAGGAAACGGGAATCACCTTCAGGAAATCCTAATGAAGCATCTTATAAATCCGGAATTATGTTCCTCGGTTCAACTGGGGAATCATCAAGCTCATCCCGGAGGCCTGTCTTGGATGCTGAAGTGATTGAGTTGTTATCCACACCAAGGGGTTCATCGAGCTCATCCCGGAGCCCCGTCTTGGATCATGAAGTGGTTGATTTGCTATCCACACCAAGGTATGCCAACAGATCATCTGAAGATTTAGATGATAATGACAATAATAGCTTGGAAGCTCGGGCGAGACAAGTGGAAGCAGATGAGAGATTGGCACGTGAACTCCAAGAACAACTGTATCATGATGATTCTTTTGAAGGCAGAGATATTGATGAAAATTTAGCATGGGACCTGCAGCGTGCAGAGGCTCTTTTGCGTACAAATATTGATAGTCACAGCATAAATCAACCTACACAGTTACCAAGGGCAAATAGACAGCCTCGTACACGGTTTCATCAAAATCCTTCTCGAAGGAGAGCTATGCCTCAAGTTTCTTTCTCTAATCGAATGTCACAGTGGAGGAGTCGTGCTACAAGTCGGACTCGGGCACCTATCATATCATCTAGAGGAAGAGGCCCCCGCTTTCCTCTGGATATGGACTTGGATATGAGACTTGATATATTGGAAGCTTTAGAGGATTCAATAGGGGATTTCAGCGATATGGGAATGTCTGATGACATCTTTAATGCGCATCATGATTTCACTGACGCTGATTATGAAAGGCTATTGGCCCTTGATGAGGGAAATCACCAACATACTGGTGCATCTGCCAATCTGATCAATAGCTTGCCGCAGTCCACCATCCAGACTGACAACTTCACAGACGCATGTGCCATATGTCTTGAGACCCCAGTCAGGGGAGAAACTATTCGCCATCTTCCTTGTTTGCACAAATTTCACAAAGATTGTATCGATCCTTGGCTCCAGAGGAAAACATCATGCCCAGTGTGCAAGTCGTCGATCACCTAA 2250 0.4302 MAEDMKIDHIVEVPDTPDRITVRPDDQKYLGNPEKRGRAFNAADEKNNHSNYITLSPSEESHPSQNAPIFRRAQTEKILELGATHSNGAEKMDKGKSISSKVPSKSSHSGISVLDLTEENGQFRPLKPAFSHRGTRDNATEDKNALKETVGNSSLPFVADSSNTSRNAFTGKCKLDNKTLPGPNISVDRGKGISLSNDSRSQNEKQVSLPPRVSTSPRGRGHKRLVRNGCISPHNIATREKQLAEQSNHQTIDVEQNHAGRSVSSNTVSPNSVDDIVAGDRGNGRVKGKEVLSHPSPQRHTFRTASSRPVTNYEEINGTINAIRNSLQYSGGQGGWRTTHERNVDRHSYDANGHHSRRNNDVGRFNNRQNTNRMDRRNTGSGSQSDHTAQPTSVIIPDVDQSSGTRPTADILTKRQRKRESPSGNPNEASYKSGIMFLGSTGESSSSSRRPVLDAEVIELLSTPRGSSSSSRSPVLDHEVVDLLSTPRYANRSSEDLDDNDNNSLEARARQVEADERLARELQEQLYHDDSFEGRDIDENLAWDLQRAEALLRTNIDSHSINQPTQLPRANRQPRTRFHQNPSRRRAMPQVSFSNRMSQWRSRATSRTRAPIISSRGRGPRFPLDMDLDMRLDILEALEDSIGDFSDMGMSDDIFNAHHDFTDADYERLLALDEGNHQHTGASANLINSLPQSTIQTDNFTDACAICLETPVRGETIRHLPCLHKFHKDCIDPWLQRKTSCPVCKSSIT 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03500 749 SUPERFAMILY RING/U-box 698 748 - -
Pumo3g03500 749 CDD RING-H2_PA-TM-RING 704 745 - -
Pumo3g03500 749 SMART ring_2 704 744 IPR001841 -
Pumo3g03500 749 ProSiteProfiles Zinc finger RING-type profile. 704 745 IPR001841 -
Pumo3g03500 749 MobiDBLite consensus disorder prediction 561 618 - -
Pumo3g03500 749 PANTHER SI:CH211-59O9.10 352 749 - -
Pumo3g03500 749 MobiDBLite consensus disorder prediction 280 296 - -
Pumo3g03500 749 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 670 749 IPR013083 -
Pumo3g03500 749 MobiDBLite consensus disorder prediction 174 226 - -
Pumo3g03500 749 MobiDBLite consensus disorder prediction 86 109 - -
Pumo3g03500 749 Coils Coil 505 525 - -
Pumo3g03500 749 MobiDBLite consensus disorder prediction 255 273 - -
Pumo3g03500 749 FunFam RING/U-box superfamily protein 669 749 - -
Pumo3g03500 749 MobiDBLite consensus disorder prediction 45 65 - -
Pumo3g03500 749 MobiDBLite consensus disorder prediction 347 362 - -
Pumo3g03500 749 MobiDBLite consensus disorder prediction 363 410 - -
Pumo3g03500 749 MobiDBLite consensus disorder prediction 561 612 - -
Pumo3g03500 749 MobiDBLite consensus disorder prediction 347 433 - -
Pumo3g03500 749 MobiDBLite consensus disorder prediction 255 306 - -
Pumo3g03500 749 Pfam Ring finger domain 703 745 IPR001841 -
Pumo3g03500 749 MobiDBLite consensus disorder prediction 190 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03500 Pumo-Chr3 70330338 70337199 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03500 501 749 C3H Transcription Factor Family AT1G04790 47.794 7.16e-64 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03500 - - gmx:100796218 1155.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03500 3 70330338 70337199 Pumo3g03500 3 70330338 70337199 ECH