Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03470 ATGGCTCATACACTTCAACGTGCACTTTCTCATCTACTCATTCTTGTAGCTTCACTTTCAATACTCCTAGTGGCCCCCACCTCTTGTTTCAACCCCAAAAAGATTGTGAATGCTTCCTATGCTTCATACTCCTTATATGGTTCAGATTGGTCTCCTGCTGTGGCCACTTGGTATGGACCTGCCCAAGGGGATGGTAGTGAAGGTGGTGCTTGTGGTTATGGCAGTGCTGTTGGGGTACCTCCTTTCTCATCAATGATAACTGCGGGAAGCCCTCTTTTGTTTGAATCAGGCAAAGGCTGTGGTTCTTGTTATGAGGTGAAGTGCACAGGGGATTATGCATGCTCAGGCAATTCTGTAAGGGTAGTCATCACTGATAGCTGTCCTGGGTGTGGCTCAGATGCTCAATATCATTTTGATTTAAGTGGCACTGCTTTTGGTGCCATGGCAATTTCAGGCAAAGACGAGAAGCTACGCAATGCTGGGAAAATAAACATTCAATTTAGAAGAGTTGAATGCAACTATCCCGGTGTGTCAATAGCATTTCGCGTGGACTCTGGATCCAACAAGGAATATCTTGCAATCTTGATTGAATATGAGGGTGGTGATGGTGACCTTGACAAAGTTGAACTCAAAGAAGGACCCGATTCAGCACCATGGTATTCCATGCAGCAATCATGGGGTGCAGTTTGGAAACTTGACAAAGGGTCACCACTTGTAGCACCATTCTCCATCAGGCTAACCACTCTCAAATCTGGCAAGACCATTGTGGCTAACAATGTCATCCCTAAGGGGTGGACCATTGATCAGACTTATAGATCAATTGTTGTTAATGCTTCATTGGCTTCAAACAACAACTCAGACGGTTTATATTGGTCACCTGCTGTGGCCACTTGGTATGGATCTCCCCATGGGGATGGAAGTGAAGGTGGTGCTTGTGGTTTTGGCAGTGTTGTTGGGGTGCCTCCATTCTCATCAATGATATCTGCGGGAAGCCCTCTTTTGTTTGAATCAGGCAAAGGCTGTGGTTCTTGTTATCAGGTGAAGTGCACAGGGAATAATGGATGCTCAGGCAACCCTGTTAGGGTAGTCATCACTGATAGCTGTCCTGGGTGTGGGTCAGATGCTCAATATCATTTTGATTTGAGTGGCACTGCTTTTGGTGCAATGGCAGTTTCAGGCCAAGATGAGAAGCTACGCAATGCTGGTAAAATAGCCATTCAATTTAGAAGAGTTGAATGCTACTATCCCGGTGTGTACATAGCTTTTCACGTGGACTCTGGGTCCAACCAAGAATACTTTGCAGTCTTGGCTGAATACGAGGATGGGAATGGTGAACTTGACAATGTTGAACTGAAGGAAGCATTTTCAGCCTCATGGTATTCCATGCAACGATCGTGGGGTGCAGTTTGGAAACTTAACAAAGGGTCACCACTTAAACCACCATTCTCCATCAGGCTAACTGCCTCTGGCAAATCTGTTGTGGCTAACAATGTGATCCCTGCTGGGTGGACACCTGGTCAGACTTATAGATCAGTTGTCAATTTTTGA 1548 0.4567 MAHTLQRALSHLLILVASLSILLVAPTSCFNPKKIVNASYASYSLYGSDWSPAVATWYGPAQGDGSEGGACGYGSAVGVPPFSSMITAGSPLLFESGKGCGSCYEVKCTGDYACSGNSVRVVITDSCPGCGSDAQYHFDLSGTAFGAMAISGKDEKLRNAGKINIQFRRVECNYPGVSIAFRVDSGSNKEYLAILIEYEGGDGDLDKVELKEGPDSAPWYSMQQSWGAVWKLDKGSPLVAPFSIRLTTLKSGKTIVANNVIPKGWTIDQTYRSIVVNASLASNNNSDGLYWSPAVATWYGSPHGDGSEGGACGFGSVVGVPPFSSMISAGSPLLFESGKGCGSCYQVKCTGNNGCSGNPVRVVITDSCPGCGSDAQYHFDLSGTAFGAMAVSGQDEKLRNAGKIAIQFRRVECYYPGVYIAFHVDSGSNQEYFAVLAEYEDGNGELDNVELKEAFSASWYSMQRSWGAVWKLNKGSPLKPPFSIRLTASGKSVVANNVIPAGWTPGQTYRSVVNF 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03470 515 PANTHER EXPANSIN-B3 23 275 - -
Pumo3g03470 515 Pfam Lytic transglycolase 87 167 IPR009009 -
Pumo3g03470 515 Pfam Lytic transglycolase 328 407 IPR009009 -
Pumo3g03470 515 Gene3D - 415 515 IPR036749 -
Pumo3g03470 515 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 68 177 IPR007112 -
Pumo3g03470 515 PRINTS Expansin/Lol pI family signature 290 305 IPR007118 GO:0005576
Pumo3g03470 515 PRINTS Expansin/Lol pI family signature 459 473 IPR007118 GO:0005576
Pumo3g03470 515 PRINTS Expansin/Lol pI family signature 308 326 IPR007118 GO:0005576
Pumo3g03470 515 PRINTS Expansin/Lol pI family signature 331 349 IPR007118 GO:0005576
Pumo3g03470 515 PRINTS Expansin/Lol pI family signature 401 417 IPR007118 GO:0005576
Pumo3g03470 515 PRINTS Expansin/Lol pI family signature 497 511 IPR007118 GO:0005576
Pumo3g03470 515 CDD DPBB_EXPB_N 50 172 - -
Pumo3g03470 515 SUPERFAMILY PHL pollen allergen 179 273 IPR036749 -
Pumo3g03470 515 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 190 273 IPR007117 -
Pumo3g03470 515 Gene3D - 275 413 IPR036908 -
Pumo3g03470 515 Gene3D - 33 172 IPR036908 -
Pumo3g03470 515 SUPERFAMILY PHL pollen allergen 420 511 IPR036749 -
Pumo3g03470 515 PRINTS Major pollen allergen Lol pI signature 149 164 IPR005795 GO:0005576|GO:0019953
Pumo3g03470 515 PRINTS Major pollen allergen Lol pI signature 88 99 IPR005795 GO:0005576|GO:0019953
Pumo3g03470 515 PRINTS Major pollen allergen Lol pI signature 127 142 IPR005795 GO:0005576|GO:0019953
Pumo3g03470 515 PRINTS Major pollen allergen Lol pI signature 197 212 IPR005795 GO:0005576|GO:0019953
Pumo3g03470 515 PRINTS Major pollen allergen Lol pI signature 228 245 IPR005795 GO:0005576|GO:0019953
Pumo3g03470 515 PRINTS Major pollen allergen Lol pI signature 181 196 IPR005795 GO:0005576|GO:0019953
Pumo3g03470 515 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 309 418 IPR007112 -
Pumo3g03470 515 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 431 511 IPR007117 -
Pumo3g03470 515 SMART dpbb_1 86 167 IPR007112 -
Pumo3g03470 515 SMART dpbb_1 327 408 IPR007112 -
Pumo3g03470 515 SUPERFAMILY Barwin-like endoglucanases 291 417 IPR036908 -
Pumo3g03470 515 CDD DPBB_EXPB_N 291 413 - -
Pumo3g03470 515 Gene3D - 173 274 IPR036749 -
Pumo3g03470 515 Pfam Expansin C-terminal domain 179 262 IPR007117 -
Pumo3g03470 515 Pfam Expansin C-terminal domain 420 500 IPR007117 -
Pumo3g03470 515 SUPERFAMILY Barwin-like endoglucanases 40 176 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03470 Pumo-Chr3 69005114 69022305 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03470 277 515 Expansin Gene Family AT1G65680 59.504 4.47e-96 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03470 - - gmx:100777550 499.59