LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo3g03455	ATGTTCATCATCATCATAATGCTTTTGTTGCTCTCTAACTTGTTGATCCAACTTCAAACTTGTGCAAGCACTGTGGTTGACCCTAACACTTTCTCCTTTGTTACTTTCACTCCTGGAAGTTGCACCAATGGTGAGTTGCTTTGCATGGGTTCAGCCACTGCTGGCAATGGGTATTTGAGTCTCACCCCAGAGCCACAACAAGGTGGCAATTCAAGTTCATCATTGTCTAACACAACAACCAACAATGTTGGAAGGGTTCTGTACCCTCATCCTGTGAATCTTTGGCCTGCAATTATCTCTACAACCTTCACTGTTAGGATCACTCCTTTTTCAGAAAATTTAACTGGCTGTGGAGATGGAATGGCACTGGTGTTTGCACAAGATAATAGGCCCTCACCAAATGGCTCATATCTTGGCATGTTTGATCAGTCTACACAAGGTGGGGGTTTTCAACAAATAGCTGTGGAGATGGACACTTTCATGAATGAATTTGATCAAGATGGAAACCACATTGGGATAGTCACAACAAGCATCACAAATCCACTTGCATCTGAGAGTCTCAATAGCACTGGCATTGACCTCAAAAGTGGAAGAGACATTGTGGTCAAAATTGACTATGATGGATGGAGTAAAATGATTTTTGTCTCTGTGGGATACTCTGAAAGCCAATTGAAGAGTGTCCTTAACCATTCAATTAACCTACCAGACATAGTTCCAAGCTCCATTTATGTAGGTTTCACAGCCTCCACAGGCAACAACACTTTTCCTGAAAGCCACCAAGTCCTCAATTGGGTATTCACATCAGTGCCACTGCCTATTCTTTCTGTTGAACACACTAAGGTTGGCACCATCAAGACCATATTGGTAATTGTCATGGTATGCTTATTTCCTTGTATTTGGATAGCTGCTTCTTTGAGGAAAAGATATGTGAGGAGTAAAAAGAAGGGGGATATAGAAAGCCTATCAAAGAAGGCTGCAGATATCCCCAAGGTGTTCACTTACAAGCAACTATCAAGGGCCACATGCAATTTCAGCCAGGAAAATCTTTTGGGCAAAGGTGCATTTGGTAGTGTTTACAAAGGCTTCATATTAGACTCTGGAAAAACTGTAGCGGTAAAGAAGATTTCAGCAACTTCTAAGCAAGGTGAAAGAGAGTTCTTAGCTGAAATATGTACCATTGGGCGTCTTAGGCACAAAAACTTAGTGAAGCTCCAAGGCTGGTGCAGTGAAGGCAAGAATCTTCTCTTGGTTTATGATTACATGCAAAATGGAAGCCTTGATCACTTCATAGGCAAGGGTAGTCTGAACTGGCAAACCAGGCACAAGATATTGACAGGATTGGCATCAGCATTACTTTACCTTCATGAAGAGTGTGGAAACCCTTTTGTTCACAGAGATGTTAAGCCTAACAATGTCATGCTGGACTCCAATCACAATGCTCATTTAGGAGATTTTGGGCTAGCAAGATTACTCAAAAATGAAGGTTCAGTGACTACAAATCTGAATGGAACTCTAGGATATTTGGCTCCTGAACTAAGCTTTACAGGGAGAGCTACACCTGAATCAGATGTGTATAGCTTTGGCATGGTAGTTCTTGAAGTCATATGTGGGAAAAGGTTAAACTGGCTTAAGCAAGGGAACAGTTTTGTAGACTCTGTGTGGAATTTGCATGCTCAAAATGCATTGCTTGAGTGTGTTGACCAACGACTAGAGAACAAATTTGATGAGGAAGAAGCTAAAAGGGCATTGATGGTTGGATTGGCATGTTTGCATCCGGATTCCATGTTCAGGCCAAGGATGAGAAAAGTTGTGAACATTTTTCAGAACCCAAATGAACCTTTAATGGAATTACCAGGAGTGAGGCCCACTGGAGTTTATGTATCAGTTTCTTCTAGTACATCAGCCTCCAACTCTAGCTCTAGAGGTGAGTTACAGCTCCAATCATCCACAAAATCATCAGATGGAAAATTCATTTGTGTATGA	1983	0.4155	MFIIIIMLLLLSNLLIQLQTCASTVVDPNTFSFVTFTPGSCTNGELLCMGSATAGNGYLSLTPEPQQGGNSSSSLSNTTTNNVGRVLYPHPVNLWPAIISTTFTVRITPFSENLTGCGDGMALVFAQDNRPSPNGSYLGMFDQSTQGGGFQQIAVEMDTFMNEFDQDGNHIGIVTTSITNPLASESLNSTGIDLKSGRDIVVKIDYDGWSKMIFVSVGYSESQLKSVLNHSINLPDIVPSSIYVGFTASTGNNTFPESHQVLNWVFTSVPLPILSVEHTKVGTIKTILVIVMVCLFPCIWIAASLRKRYVRSKKKGDIESLSKKAADIPKVFTYKQLSRATCNFSQENLLGKGAFGSVYKGFILDSGKTVAVKKISATSKQGEREFLAEICTIGRLRHKNLVKLQGWCSEGKNLLLVYDYMQNGSLDHFIGKGSLNWQTRHKILTGLASALLYLHEECGNPFVHRDVKPNNVMLDSNHNAHLGDFGLARLLKNEGSVTTNLNGTLGYLAPELSFTGRATPESDVYSFGMVVLEVICGKRLNWLKQGNSFVDSVWNLHAQNALLECVDQRLENKFDEEEAKRALMVGLACLHPDSMFRPRMRKVVNIFQNPNEPLMELPGVRPTGVYVSVSSSTSASNSSSRGELQLQSSTKSSDGKFICV	660

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo3g03455	660	CDD	STKc_IRAK	350	604	-	-
	Pumo3g03455	660	FunFam	Putative L-type lectin-domain containing receptor kinase S.7	27	279	-	-
	Pumo3g03455	660	FunFam	probable L-type lectin-domain containing receptor kinase S.5	329	420	-	-
	Pumo3g03455	660	SUPERFAMILY	Protein kinase-like (PK-like)	328	637	IPR011009	-
	Pumo3g03455	660	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	462	474	IPR008271	GO:0004672\|GO:0006468
	Pumo3g03455	660	Gene3D	Transferase(Phosphotransferase) domain 1	421	615	-	-
	Pumo3g03455	660	SMART	serkin_6	344	607	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo3g03455	660	Pfam	Legume lectin domain	30	269	IPR001220	GO:0030246
	Pumo3g03455	660	CDD	lectin_legume_LecRK_Arcelin_ConA	31	268	IPR001220	GO:0030246
	Pumo3g03455	660	Pfam	Protein kinase domain	345	605	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo3g03455	660	Gene3D	Phosphorylase Kinase; domain 1	329	420	-	-
	Pumo3g03455	660	Gene3D	-	27	278	-	-
	Pumo3g03455	660	MobiDBLite	consensus disorder prediction	631	660	-	-
	Pumo3g03455	660	ProSiteProfiles	Protein kinase domain profile.	344	615	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo3g03455	660	SUPERFAMILY	Concanavalin A-like lectins/glucanases	34	269	IPR013320	-
	Pumo3g03455	660	FunFam	probable L-type lectin-domain containing receptor kinase S.5	421	615	-	-
	Pumo3g03455	660	ProSitePatterns	Protein kinases ATP-binding region signature.	350	374	IPR017441	GO:0005524
	Pumo3g03455	660	PANTHER	-	73	611	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo3g03455	Pumo-Chr3	68382429	68385559	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo3g03455	34	623	Receptor kinase-like Gene Family	AT5G55830	37.674	1.26e-116	362

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Pumo3g03455		Pkinase	2e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo3g03455	-		-	gmx:102665030	1177.93