Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03452 ATGAACAGCACTTCCAATTCTGATGGCAACCCTTCACTGGAGCAGAAAGGATCATATGATGCATATTACTCACTTGGGTTATCTCTAGGGCTTCTCCTAGTGATCACTGTCATAAGTCTCATTTCCTTTTACTGTAGCCGTAGAAGCTTGCAAAACAGCCAAGTAAGTGTCGCTGCCAACACAAGCATGGAGCTTGATTCTGCATCAATAACTATCCAAGTTTATCAGCAAAACAGTGTTGTGAACAGTTATCCAGTGCTATTGTACTCAGAAGTCAAGCATCACAAGCCTGATTCAGAAACAATAATAACATCTTGTTGCTCAATATGCTTGGCAGATTACAAGGACACAGAGTGGGTGAAGCTTCTTCCTGACTGTGGCCACTTGTTTCATAGAGATTGCATTGATAGGTGGTTGCAGGTGAACCTCTCATGCCCCGTGTGTCGAAATTCACCACTGCCAACTCCTCTTTCAACCCCTCGTGCTGAAGTTACTCCTTTGGCAACAAGACGTGATTAA 519 0.4355 MNSTSNSDGNPSLEQKGSYDAYYSLGLSLGLLLVITVISLISFYCSRRSLQNSQVSVAANTSMELDSASITIQVYQQNSVVNSYPVLLYSEVKHHKPDSETIITSCCSICLADYKDTEWVKLLPDCGHLFHRDCIDRWLQVNLSCPVCRNSPLPTPLSTPRAEVTPLATRRD 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03452 172 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Pumo3g03452 172 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 163 IPR045899 -
Pumo3g03452 172 SUPERFAMILY RING/U-box 80 153 - -
Pumo3g03452 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 153 IPR013083 -
Pumo3g03452 172 SMART ring_2 107 148 IPR001841 -
Pumo3g03452 172 Pfam Ring finger domain 107 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03452 Pumo-Chr3 68299652 68300170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03452 23 170 C3H Transcription Factor Family AT5G06490 36.905 3.10e-37 125