Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03449 ATGTTCAGAAGGGTGAGGCTGACTGGCGGTATCACACAAAAGATTAATGCTTGGAACATACACCAAAGAACTAAGGAACTGATCAATGCAAACCTGAAACCTCCCGATCTACTGGTTCTTGATACCCCTGGACACGACTCATTTACTTACCTGAGGTCTTTGGCTTCAAGTCTATGTGATATTACAATTTTGGTTGTTGACACTATGCATGGGTTAGAGCCACAAACAGTAGAATCACTAAATCTATTAAGAAAGAGGAATAAAAAATTCATTGTTGCCTTGAATAAGGTTGACAGGCTTCGTGGGTGGAAACCATGTCACAATACTCCAATTGCTGAAGCAGTGGAGCAGCAGACTCAGGATGTTCAACTTAAGTTTTATGAGTTGCTCGATGATATTATTTATCAATTTGGAGAACAGGGGCTGAGTGCTCAGTTGCTGAATATCGAAAACAATGAAATGAGAGAAAGGGTCTTTTTCAAATGTAAAACGTTGCAAATTGTCGGTGTAAATTCATTGTTGGCAATTCAGGCAATAAAGGCAAGAGAGTCACGAGCCTCTTTCAGTGCTCAACGTTGCAACATTGTCAGTATTAAAAAATTACACACTATTGAAGGGAAAGGGCATTGTGGGAAACGAGTGCTTTCCACATGCGGTTACTGGAGTGTATTATTTAGTATGTCTTACAGGTCACAACTCAGTAATAAAGTAATAATGGTCTCATTTCAGGAAAAATATCTTAAGCACAACAAACTCAAAGCTGCAATGGGTATAAAAATCATTGCCCAGGGGCTTGAACATGCCATTGCTGGCACTGATTTATATGTGGTGAAGCCTGATGATGATTTGGAAGAAGTTAAAGAAGCAGCCACGGAATATATGCGGTCAGTCATGAGCAGGATTGACAGAACCAATGAGGGTGTTTGTGTACAGGCATCTACCCTTGGCTCCTTGGAAGCATTACTGGAGTTTTTGAAAACACCATACGTGAGTATCCCTGTTAGTGGTATAAGCATAGGCCCTGTACATAAAAAGGATGTAATGAATGCCAGTGTAATGCTTGAAAAGAAGAAAGAGTATGCAGCAATATTGGCATTTGATGTCAAAGTTACTCCTGAGGCTAGGGAACTGGCAGATGAATTGGGCGTCAAGATATTTGTTGCTGATGTCATTTATCATCTGTTCGATCAATTTAAAGCTTATATTGACAACATGGAGAAAAAGAGAGAAGCCGCTGACGAGGCAGTCTTCCCATGTGTTTTGAAAGTCTTACCAAAATGCATTTTCAACATGAAGGACCCAATTGTTTTGGGAGTTGATATCGTTGAAGGCATTGCAAAGATTGGGACTCCAATCTGCATTCCTTCCAGAGAGTTCATTGATATTGGTTGCATTGCCTCCATTGAGAATAACCATCTACCTGTTAATTATGCAACGAAGGGGCAGAAAGTAACCATTAAGATTGTTGGCAGCAATCCTGAAGAACAACAAAAAATGTATGGGAGGCATTTTGAGTTTGTTGATGAACTTGTAAGCGATATTTCACGAAGATCTATTGATATACTCAAAGCTAATTATTGGGATCATCTTTCTACGGAGGAATGGAGGTTGGTTTCGAAATTGAAGAATCTTTTCATGATACAAAACAATGAGGAAACTTGA 1662 0.3953 MFRRVRLTGGITQKINAWNIHQRTKELINANLKPPDLLVLDTPGHDSFTYLRSLASSLCDITILVVDTMHGLEPQTVESLNLLRKRNKKFIVALNKVDRLRGWKPCHNTPIAEAVEQQTQDVQLKFYELLDDIIYQFGEQGLSAQLLNIENNEMRERVFFKCKTLQIVGVNSLLAIQAIKARESRASFSAQRCNIVSIKKLHTIEGKGHCGKRVLSTCGYWSVLFSMSYRSQLSNKVIMVSFQEKYLKHNKLKAAMGIKIIAQGLEHAIAGTDLYVVKPDDDLEEVKEAATEYMRSVMSRIDRTNEGVCVQASTLGSLEALLEFLKTPYVSIPVSGISIGPVHKKDVMNASVMLEKKKEYAAILAFDVKVTPEARELADELGVKIFVADVIYHLFDQFKAYIDNMEKKREAADEAVFPCVLKVLPKCIFNMKDPIVLGVDIVEGIAKIGTPICIPSREFIDIGCIASIENNHLPVNYATKGQKVTIKIVGSNPEEQQKMYGRHFEFVDELVSDISRRSIDILKANYWDHLSTEEWRLVSKLKNLFMIQNNEET 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03449 553 FunFam Eukaryotic translation initiation factor 5B 411 548 - -
Pumo3g03449 553 Gene3D - 3 183 IPR027417 -
Pumo3g03449 553 SUPERFAMILY Translation proteins 415 548 IPR009000 -
Pumo3g03449 553 CDD IF2_aeIF5B_IV 419 514 - -
Pumo3g03449 553 Gene3D Translation factors 234 301 - -
Pumo3g03449 553 Pfam Translation-initiation factor 2 285 399 IPR023115 -
Pumo3g03449 553 FunFam Eukaryotic translation initiation factor 5B 300 406 - -
Pumo3g03449 553 Gene3D Translation factors 411 548 - -
Pumo3g03449 553 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 9 541 IPR015760 -
Pumo3g03449 553 Pfam Elongation factor Tu GTP binding domain 9 155 IPR000795 GO:0003924|GO:0005525
Pumo3g03449 553 Gene3D - 302 406 IPR036925 -
Pumo3g03449 553 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 283 408 IPR036925 -
Pumo3g03449 553 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 1 280 IPR000795 GO:0003924|GO:0005525
Pumo3g03449 553 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 137 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03449 Pumo-Chr3 68001766 68007091 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03449 9 548 Eukaryotic Initiation Factors Gene Family AT1G76810 60.777 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03449 K03243 - gmx:100814640 670.618