Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03446 ATGGGGAACACATGCGTTGGTCCTAGCATTTCGAAAAATGGTTTTGTTCAATCAGTTTCTGCGGCGATTTGGCGGTCCCAATTGCCTGATGAATCAGTGTCTAATAGAGAATCTGTAAAAGAGGAAGCAAGTAGTGTGCCCGAATCGCCCTTGCCTGTCCAAAACAAACCTCCTGAGCAGATAACTATGCCGAAACCGGAAGCCAAGCAAGAGGCAAAATCGGAAATAGTACCGGAACAGCAGGAACAGGAGAAGAAGAAACAGAAGAAACGTGGTTCGGTGAAGAGAGTTTCTAGCGCAGGGCTTCGTGTTGATTCCGTGTTGCAAAGAGAGACTGATAATTTCAAGGAGTTCTTCACTCTCGGGAGAAAACTTGGACAGGGTCAGTTCGGGACAACGTTCTTGTGCGTGGAGAAGGCAACAGGGCAGGAGTATGCCTGCAAATCTATTGCAAAGAGGAAACTCGTCACCGATGATGATGTTGAGGATGTGAGAAGAGAAATTCAGATAATGCACCACTTGGCTGGGCATCCTAATGTTATATCCATCAAAGGTGCATATGAGGATGCCGTGGCTGTTCATGTTGTGATGGAATTATGTGCAGGTGGAGAGTTGTTCGATAGGATTATTCAGCGTGGGCATTATACTGAGAGACAGGCAGCTGAGCTTACTAGGACTATAGTTGGGGTTGTGGAAGCTTGCCATTCTCTTGGTGTGATGCATAGAGATCTTAAACCTGAGAATTTTCTCTTTGTCAATCAGAACGAGGATTCACTTCTCAAAACCATTGACTTTGGATTATCTGTCTTCTTTAAGCCAGGTGATATATTTAATGATGTGGTGGGCAGCCCATACTATGTTGCCCCTGAAGTTTTGCGAAAGCGTTATGGTCCTGAGGCAGATGTTTGGAGTGCTGGTGTTATCCTTTACATTCTTTTGAGTGGAGTACCTCCATTTTGGGCTGAAAACGAACAAGGAATATTTGAACAGGTTCTGCGTGGTGATCTTGACTTTTCTTCTGATCCCTGGCCTTCAATTTCTGAAAGTGCAAAAGATTTAGTAAGGAAAATGCTTTTTCGCGACCCTAGAAGGCGGCTGACTGCACATCAAGTATTATGTCATCCTTGGATTCAAGTTGATGGTGTAGCTCCTGACAAGCCACTTGATTCTGCCGTATTAAGTCGCTTAAAGCAATTTTCTGCTATGAACAAGCTCAAGAAAATGGCCCTTATAATTATTGCTGAGAGCTTATCTGAAGAAGAAATAGCTGGCTTAAAAGAGATGTTCAAGATGATAGATGCAGACAACAGTGGTCAAATCACTTTTGAAGAACTTAAAGCTGGTATGAAAAGAGTGGGTGCTAATCTTAAGGAGTCTGAAATTTATGATTTAATGCAAGCGGCTGATATTGACAACAGCGGGACAATCGATTATGGCGAGTTCCTTGCTGCAACATTGCACCGCAACAAAATTGAAAGAGAAGATAATTTATTTGCAGCCTTTTCTTACTTTGACAAAGATGGAAGTGGCTATATTACTCAGGAAGAACTTCAACAGGCTTGTGATGAGTTTGGTATAAAAGATGTCCGCTTGGAAGAGATAATCAAGGAAATTGATGAAGATAATGATGGACGCATAGATTACAATGAGTTTGTGGCTATGATGCAGAAAGGAAATCTTCCAGCGGTTGGTAAGAAGGGCCTAGAAAATAGCTTCAGCATTAAGTTCAGGGAGGCATTAAAATTGTAG 1749 0.4254 MGNTCVGPSISKNGFVQSVSAAIWRSQLPDESVSNRESVKEEASSVPESPLPVQNKPPEQITMPKPEAKQEAKSEIVPEQQEQEKKKQKKRGSVKRVSSAGLRVDSVLQRETDNFKEFFTLGRKLGQGQFGTTFLCVEKATGQEYACKSIAKRKLVTDDDVEDVRREIQIMHHLAGHPNVISIKGAYEDAVAVHVVMELCAGGELFDRIIQRGHYTERQAAELTRTIVGVVEACHSLGVMHRDLKPENFLFVNQNEDSLLKTIDFGLSVFFKPGDIFNDVVGSPYYVAPEVLRKRYGPEADVWSAGVILYILLSGVPPFWAENEQGIFEQVLRGDLDFSSDPWPSISESAKDLVRKMLFRDPRRRLTAHQVLCHPWIQVDGVAPDKPLDSAVLSRLKQFSAMNKLKKMALIIIAESLSEEEIAGLKEMFKMIDADNSGQITFEELKAGMKRVGANLKESEIYDLMQAADIDNSGTIDYGEFLAATLHRNKIEREDNLFAAFSYFDKDGSGYITQEELQQACDEFGIKDVRLEEIIKEIDEDNDGRIDYNEFVAMMQKGNLPAVGKKGLENSFSIKFREALKL 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03446 582 SMART serkin_6 119 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g03446 582 CDD EFh 497 556 IPR002048 GO:0005509
Pumo3g03446 582 ProSiteProfiles EF-hand calcium-binding domain profile. 530 561 IPR002048 GO:0005509
Pumo3g03446 582 Gene3D - 402 561 - -
Pumo3g03446 582 FunFam Calcium-dependent protein kinase SK5 205 389 - -
Pumo3g03446 582 FunFam Calcium-dependent protein kinase 1 121 204 - -
Pumo3g03446 582 ProSiteProfiles Protein kinase domain profile. 119 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g03446 582 ProSitePatterns EF-hand calcium-binding domain. 505 517 IPR018247 -
Pumo3g03446 582 ProSiteProfiles EF-hand calcium-binding domain profile. 420 455 IPR002048 GO:0005509
Pumo3g03446 582 ProSiteProfiles EF-hand calcium-binding domain profile. 492 527 IPR002048 GO:0005509
Pumo3g03446 582 Pfam EF-hand domain pair 437 487 IPR002048 GO:0005509
Pumo3g03446 582 FunFam Calcium-dependent protein kinase 1 385 559 - -
Pumo3g03446 582 SUPERFAMILY Protein kinase-like (PK-like) 118 378 IPR011009 -
Pumo3g03446 582 ProSitePatterns Protein kinases ATP-binding region signature. 125 152 IPR017441 GO:0005524
Pumo3g03446 582 MobiDBLite consensus disorder prediction 66 88 - -
Pumo3g03446 582 CDD EFh 425 484 IPR002048 GO:0005509
Pumo3g03446 582 Gene3D Phosphorylase Kinase; domain 1 121 204 - -
Pumo3g03446 582 ProSiteProfiles EF-hand calcium-binding domain profile. 456 491 IPR002048 GO:0005509
Pumo3g03446 582 MobiDBLite consensus disorder prediction 26 95 - -
Pumo3g03446 582 Pfam Protein kinase domain 120 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g03446 582 SUPERFAMILY EF-hand 417 557 IPR011992 -
Pumo3g03446 582 Pfam EF-hand domain pair 495 556 IPR002048 GO:0005509
Pumo3g03446 582 ProSitePatterns EF-hand calcium-binding domain. 433 445 IPR018247 -
Pumo3g03446 582 Gene3D Transferase(Phosphotransferase) domain 1 205 401 - -
Pumo3g03446 582 ProSitePatterns EF-hand calcium-binding domain. 539 551 IPR018247 -
Pumo3g03446 582 SMART efh_1 530 558 IPR002048 GO:0005509
Pumo3g03446 582 SMART efh_1 460 488 IPR002048 GO:0005509
Pumo3g03446 582 SMART efh_1 424 452 IPR002048 GO:0005509
Pumo3g03446 582 SMART efh_1 496 524 IPR002048 GO:0005509
Pumo3g03446 582 ProSitePatterns EF-hand calcium-binding domain. 469 481 IPR018247 -
Pumo3g03446 582 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Pumo3g03446 582 CDD STKc_CAMK 118 376 - -
Pumo3g03446 582 PANTHER SERINE/THREONINE-PROTEIN KINASE 109 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03446 Pumo-Chr3 67938275 67945398 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03446 1 582 EF-hand Containing Proteins AT5G04870 76.948 0.0 955
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pumo3g03446 Pkinase 5.6e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03446 K13412 - gmx:100797449 1088.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03287 5 82078831 82083654 Pumo3g03446 3 67938275 67945398 PCT