Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03432 ATGGATTGTGTTAAGACACTCAAACCTTTTAGTTACATAGTTAATAACATTTATTCGCAGCAGAGGTTCAAGCAGCCAGTTCTATGTGGTTGGGTTGGTTGTGCAGATGGATGTGTGGACCTTGAGACATGTGCTTGCATTGTTAAGAATGGTGGGAGAATGCTATATGATTGTAACAAAAGACTTGTTTCTCCCATGGAATCATCCCCTGTGTATGAGTGTGGTCCTTCTTGCAAATGCTCCTCATCATGTGTGAACCGAGCAAGTCAACATGGTATTCAATTCCAATTGGAAATCTTCATGACAGAATTGAAAGGCTGGGGTGTTAGAACACGATCATTCATTCCCGCTGGAAGCTTTGTATGTGAGTACATTGGAGAAGTCCATAACAAGAGAGAAGCTGGATTGAGGCCAGATGTTAATGACTACACATTTCACATAGGTGTTGGCAAGGGCTTCATTGATGCAACAACATGTGGAAACATTGGAAGATTTATAAATCATAGTTGTTCTCCAAATCTCCATGTCAAAGATGTTATGTATGATCACAATGACAAGAATCTTCCACACAAAATGCTGTTTGCTGTTAAGGACATACCTGCTGGTAGAGAGCTGAGTTATGATTATAATTCCTCCAAGTGGGGAAATTTATCAAGTTTAGGAGTAAATAGTTGCTACTGTGGATCACGGGAATGCAATGGACAGATCTACATTTAA 717 0.3989 MDCVKTLKPFSYIVNNIYSQQRFKQPVLCGWVGCADGCVDLETCACIVKNGGRMLYDCNKRLVSPMESSPVYECGPSCKCSSSCVNRASQHGIQFQLEIFMTELKGWGVRTRSFIPAGSFVCEYIGEVHNKREAGLRPDVNDYTFHIGVGKGFIDATTCGNIGRFINHSCSPNLHVKDVMYDHNDKNLPHKMLFAVKDIPAGRELSYDYNSSKWGNLSSLGVNSCYCGSRECNGQIYI 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03432 238 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 7 231 - -
Pumo3g03432 238 Pfam Pre-SET motif 7 87 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo3g03432 238 SUPERFAMILY SET domain 8 217 IPR046341 -
Pumo3g03432 238 ProSiteProfiles Pre-SET domain profile. 34 92 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo3g03432 238 ProSiteProfiles Post-SET domain profile. 221 237 IPR003616 -
Pumo3g03432 238 Gene3D SET domain 2 237 IPR046341 -
Pumo3g03432 238 Pfam SET domain 151 210 IPR001214 GO:0005515
Pumo3g03432 238 SMART set_7 95 216 IPR001214 GO:0005515
Pumo3g03432 238 ProSiteProfiles SET domain profile. 95 210 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03432 Pumo-Chr3 67388110 67388899 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03432 34 237 EF-hand Containing Proteins AT5G13960 37.860 9.21e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pumo3g03432 SET 2.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03432 - - gmx:100807574 364.385