Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03430 ATGGATGCTTCAAAGTCTTCTGGGAAAAGACGCAGGAAGGAAGTGTCTGTGAAACACAGGAAGGTTGAACAAGCATTGGCGACGTTTAGGAACTTGGTTGGCAAGCTATTGCATCAATACAAAGCGGACCCACCTGTGAATTTAAAGGCAAAGACAAAAGCTAGGATGGAAGCAGCAGCGATGATGAGACAAAAGCATCAATGGGAGAACTATAAAAAGCGCGTGGGACATGTATCAGGCATTGAGGTCGGTGACATCTTTGAAAATAGGGTCGAACTCAATGTCATTGGCCTCCATCGGCAGTTCTGGAATGGTATTGATTATATGGGAACGGGCAGGAACTCGTTGGCCATCAGCATTGTCGTAACTGATCGCTACGATAATGCTAGGAAATCCAATGGTACATTGGTTTACAGTGGCCATGGAGGAAATCCCCAGGTTAAGAATAATGCTTCTATTCAGGATCAACAGCTGCAAGGGGGGAATTTGGCTCTCAAAAATAGCATGGATACTGGAAGTCCGGTGAGGGTTATTCTGAAAGTTTGTAGAAGATTTGATGTTAGTGGCAATTCTGATTACTCATATGTTTACGATGGTTTGTATTTAGTGGATAAGATGACACAAGAAAGAGGGAAATTTGGAAAGCTTGTGTTCAAATTTACACTAAATAGAATTTCAGAGCAACCCCAGACTTGTGTTGCCCTCGAAGATGTTACGAACAATGATGACAGTTCAAGGCAACTTGCAACTTTTACCCCTAGAAAGAGACGCATTGTAGTCCAAAAGGATGTTGTTCGAGTCAACGATATTTCAGAAGGAAAAGAAAAATTTGCTATTCGGGTGGTGACATCAGCAGATTGTGTTCATATTCCCGAATCCTTCCATTACATTGTTAAGAACATCTATCCAGAGAAGTTCAAGCAGGAAATTCCACCTGGCTGTGATTGTGAAGATGAATGTCTGAACTGTGACCAATCTGTTTGTATCGATAAAAATGGTGGGAGAATGGCGTACAACTGTAAGAAAAGACTTGCTTCTCCCATGGAATCTTCGCTTATTTATGAGTGTGGCACCTCTTGCAAGTGCTCCTCTTCTTGTATTAACCGAGTAAGTCAGCATGGTATCCAGTTCCAACTGGAAATCTTCATGACAGAATTGAAAGGTTGGGGTGTTAGAACACGCTCTTTTATTCCCTCTGGAAGCTTTGTATGTGAGTACACTGGAGAAGTCCATGACAGTAGACAAAGTGGATCGAGGCTAGATGATGATGACTATTACATGGGTGTTGGAAAGGGCTTCATCAATGCAAAAAAACGTGGAAACATTGGAAGATTTATAAATCATAGTTGTTCTCCAAATCTCCATGTCAAAGATGTTATGTATGATCACAGTGACAAGAATCTTCCTCACAAAGTGCTGTTTGCTGTAAAGGACATTCCTGCTGGTAGAGAGCTGAGTTTTGATTATAATTCCTCCAAGGGAAAAATTTTCAAGTTTAGGAATAATCGCTGCTACTGTGGATCACAGGAATGCAATGGACAGATCTACATTTAA 1554 0.4131 MDASKSSGKRRRKEVSVKHRKVEQALATFRNLVGKLLHQYKADPPVNLKAKTKARMEAAAMMRQKHQWENYKKRVGHVSGIEVGDIFENRVELNVIGLHRQFWNGIDYMGTGRNSLAISIVVTDRYDNARKSNGTLVYSGHGGNPQVKNNASIQDQQLQGGNLALKNSMDTGSPVRVILKVCRRFDVSGNSDYSYVYDGLYLVDKMTQERGKFGKLVFKFTLNRISEQPQTCVALEDVTNNDDSSRQLATFTPRKRRIVVQKDVVRVNDISEGKEKFAIRVVTSADCVHIPESFHYIVKNIYPEKFKQEIPPGCDCEDECLNCDQSVCIDKNGGRMAYNCKKRLASPMESSLIYECGTSCKCSSSCINRVSQHGIQFQLEIFMTELKGWGVRTRSFIPSGSFVCEYTGEVHDSRQSGSRLDDDDYYMGVGKGFINAKKRGNIGRFINHSCSPNLHVKDVMYDHSDKNLPHKVLFAVKDIPAGRELSFDYNSSKGKIFKFRNNRCYCGSQECNGQIYI 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03430 517 SMART G9a_1 71 228 IPR003105 -
Pumo3g03430 517 Gene3D - 57 246 IPR036987 -
Pumo3g03430 517 ProSiteProfiles YDG domain profile. 76 224 IPR003105 -
Pumo3g03430 517 SMART set_7 377 496 IPR001214 GO:0005515
Pumo3g03430 517 Pfam SET domain 388 490 IPR001214 GO:0005515
Pumo3g03430 517 SUPERFAMILY SET domain 258 498 IPR046341 -
Pumo3g03430 517 ProSiteProfiles Pre-SET domain profile. 312 374 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo3g03430 517 SUPERFAMILY PUA domain-like 58 235 IPR015947 -
Pumo3g03430 517 Gene3D SET domain 259 516 IPR046341 -
Pumo3g03430 517 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 9 510 - -
Pumo3g03430 517 Pfam Pre-SET motif 270 369 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo3g03430 517 SMART preset_2 267 361 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo3g03430 517 ProSiteProfiles Post-SET domain profile. 500 516 IPR003616 -
Pumo3g03430 517 ProSiteProfiles SET domain profile. 377 490 IPR001214 GO:0005515
Pumo3g03430 517 Pfam SAD/SRA domain 75 228 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03430 Pumo-Chr3 67333926 67335552 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03430 54 515 Su(var)3-9 homologs AT1G73100 33.728 1.08e-78 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pumo3g03430 SAD_SRA 1.8e-42 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03430 - K11420 gmx:100807574 842.032