Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03427 ATGCTTACGAGTGAGTGTTCAGAAATGGATGCTTCGAAATCCATTGGGAGAAGGCATGAAGAATGGTCCCCTACCCCATCATCATCCATCATATGTCATCATGATGAGCATGTTAGTTCGTTCCCTTCGTCTAGCACGAAAGGGAATGAAGTCTCTTGGAAACACAAGAAGGTGAAACAAGCATTGGTGACATATAGGGACTTGGTTTGCAAACTAATGCATCAATATAAGGAAGACCAACCTGAGAAGATGATATCAAAAACAAGAGTTCTGACGGAAGCAGCAATGGTGATGAATAGAAAGCATCAATGGGAGAACACTGAAAGGCGTGTGGGACATGTATTAGGAATTGAAGTTGGTGACCAGTTTCAATCCAGGGCTGAACTCAATATTATTGGCCTCCATCGGCAGTTTACAAATGGCATTGATTATATGGGAATGGGCGAGAACTCGTTGGCCACGAGCATTGTTGTAACGGATCGCTATGATAATGCTAGGAAATCTAGTGATACCTTGGTTTACATAGGTCATGGAGGAAATCCTAAGGGAAGGAAAAATGTTTCACTTCAGGATCAAAAGTTGGAAGGAGGGAATTTGGCTTTGAAGAATAGCATGGATGCTAAAAGTCCTGTGAGGGTTATATTGAAGGTTTCTGAAAAATTTGATGTAATGAACAGTTCCACTAATGACATTTGTAATGGCTCATTTGTTTATGATGGACTGTATTTAGTGGATAAGATGATGCAAGAAAGAGGAAAATACGGAAAGCTTGTGTTCAAGTTTACACTGAATAGAATTTTGGAACAACCCCAAACTTGTGTTGCCCTTAAGGATGGTGTTATGGAGAATGGTGACAATTCAGGGCAAATTGCAATTGTTACTCCAAGGAAGAGGCAAAAATCAGAGATACTCACATCTTTTGATTACATAGTGAATAACATTTACTCAGAGAGATTCAAGCAGGCGATTCCATGTGGCTGTGACTGTGCAGATGGATGCGTGCACGGTGAGAGATGTGCTTGCATTGTTAAGAATGGTGGGAGAATGCCATATGAATGTAACAAAAGACTTACTTCTCCCATGGAATCATCCCTTGTTTATGAGTGTAGCCCTTCTTGCAAGTGCTCCTCTTCTTGCATCAATCGAGTAAGTCAGCATGGTATTCAGTTCCAACTGGAAATCTTCATGACAGAATTGAAAGGCTGGGGTGTTAGAACACGCTCATTCATTCCCTCTGGAAGCTTTGTATGTGAGTACATTGGAGAAGTCCATAACAAGATAGAAGCTCGATCGAGGCTAGATGTTAATGACTATATCTTTCACATGGGTGTTGGCAAGGGCTTCATTGATGCGACAAGATGTGGAAACATTGGAAGATTTATAAATCATAGTTGTTCTCCAAATCTCCATGTCAAAGATGTTATGTATGATCACAATGACAAGAATCTTCCACACAAAATGCTGTTTGCTGCTAAGGACATACCTGCTGGTAGAGAACTGAGTTATGGTGGTGCCGTGGTGGTGCGCATTGAGGGTTCCTCAAGCAAAAGATGGCATGCACATTGGGAGCTAAAACTTCCTAAACCTCCAATTATTGTTTCTTGCACCCCATTTAAGTCCAATCCAATATGTAATTTACATTTTGGATTAGGCTTTCCGGAATTTGGCGTTGGCCTATGGTCGAAAGAGACTCGTGGGTGGATATTGATTCCCAACTTCCAAGTTCCAACACTCGTCTCTGATTGTCTTTGCAAATTGACTGGAGATGCAACTTTAATTGTGGGTTTTGAATTTTTTTATGGTTCTGTTTGTGTTGTTATTTTGGTTCTCTTCTCTGCTAGGTATGTTGATGGATTCTTTTCAGTGAGGAGCTGTTGA 1878 0.4089 MLTSECSEMDASKSIGRRHEEWSPTPSSSIICHHDEHVSSFPSSSTKGNEVSWKHKKVKQALVTYRDLVCKLMHQYKEDQPEKMISKTRVLTEAAMVMNRKHQWENTERRVGHVLGIEVGDQFQSRAELNIIGLHRQFTNGIDYMGMGENSLATSIVVTDRYDNARKSSDTLVYIGHGGNPKGRKNVSLQDQKLEGGNLALKNSMDAKSPVRVILKVSEKFDVMNSSTNDICNGSFVYDGLYLVDKMMQERGKYGKLVFKFTLNRILEQPQTCVALKDGVMENGDNSGQIAIVTPRKRQKSEILTSFDYIVNNIYSERFKQAIPCGCDCADGCVHGERCACIVKNGGRMPYECNKRLTSPMESSLVYECSPSCKCSSSCINRVSQHGIQFQLEIFMTELKGWGVRTRSFIPSGSFVCEYIGEVHNKIEARSRLDVNDYIFHMGVGKGFIDATRCGNIGRFINHSCSPNLHVKDVMYDHNDKNLPHKMLFAAKDIPAGRELSYGGAVVVRIEGSSSKRWHAHWELKLPKPPIIVSCTPFKSNPICNLHFGLGFPEFGVGLWSKETRGWILIPNFQVPTLVSDCLCKLTGDATLIVGFEFFYGSVCVVILVLFSARYVDGFFSVRSC 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03427 625 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 45 521 - -
Pumo3g03427 625 Pfam SAD/SRA domain 111 269 IPR003105 -
Pumo3g03427 625 ProSiteProfiles SET domain profile. 390 505 IPR001214 GO:0005515
Pumo3g03427 625 MobiDBLite consensus disorder prediction 1 29 - -
Pumo3g03427 625 Gene3D SET domain 279 506 IPR046341 -
Pumo3g03427 625 Pfam SET domain 401 502 IPR001214 GO:0005515
Pumo3g03427 625 ProSiteProfiles Pre-SET domain profile. 325 387 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo3g03427 625 ProSiteProfiles YDG domain profile. 112 265 IPR003105 -
Pumo3g03427 625 SMART set_7 390 509 IPR001214 GO:0005515
Pumo3g03427 625 SUPERFAMILY SET domain 305 502 IPR046341 -
Pumo3g03427 625 Gene3D - 93 278 IPR036987 -
Pumo3g03427 625 SMART preset_2 276 374 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo3g03427 625 SUPERFAMILY PUA domain-like 94 274 IPR015947 -
Pumo3g03427 625 Pfam Pre-SET motif 287 382 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo3g03427 625 SMART G9a_1 107 269 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03427 Pumo-Chr3 67273835 67280741 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03427 92 521 Su(var)3-9 homologs AT1G73100 34.511 3.73e-72 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pumo3g03427 SAD_SRA 1.3e-41 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03427 - K11420 gmx:100807574 683.33