Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03421 ATGGCTGAGCAGATGATCAGTGCTGTTGCTTCTTCCTCTAACTATTCAAAAAAATATGATGTTTTTCTAAGCTTTCGTGAAAACTATGCTTCCTCAAAGTGGTGCTTGGGTGAACTCAGCAAGATTATGGAATGCAAGAAAGATAAAGGACAGATTGTGATACCAGTATTTTACAACATAGATCCATCACATGTGAGAAAGCAGACTGGGAGTTACGAACAAGCCTTTGCAAAACATGAGGGAGAACCCAGGTGCAACAAATGGAAAGCAATTCTAACTGAAGTAGCCAATTTAGCTGGGTGGGACTTTCAAACTTATAGGACTGAGCCTGAATTCCTTAAAGACATTGTTGAAGATATTTTGCAAAAATTGGCTCCTAGATACCCAAACCAGCGTAAAGGACTGGTTGGAATTGAGGAAAGTTACAAACAGATTGAATCAATACTAAAAATTGGGTCAAGTGAAGTCAAAACCCTTGGAATATGGGGCATGGGTGGCTTAGGTAAGACCACCCTTACTACTGCTTTATATGACAAACTGTCTTGTGAGTTTGAAGGTCATTGCTTCCTTGCAAATGTAAGGGAAAAATCAGACAAACTCGAAGCTTTACGCGATGAACTCTTTTCTAAGTTGTTAAAGAATAAAAATCATGGTTTTGATAATTTTGACATGCATAGGCTTCAACGTAAAAAAGTTTTCATTGTGCTGGATGATGTTGATACCTCAGAGCAATTAGAAAAACTAATTGTAGAATATGATTTCTTGGGACCAGGAAGTAGAGTCATTGTTACAACTAGAAATAAGCAAATACTTAGTCTAGTTGATGAAATATATCATGTCAAGGATTTGAGCTCTCATTACTCTCTTCAGCTTTTCTGTTTGACTGCTTTTGGGAAAAAACAACCTAAAGATGGGTTTGAAGATCTATCAAGAAGAGTAATTTCCTATTGCAAAGGTATTCCTTTGGCTTTAAAAGTTCTGGGTGCAAGTCTTCGTTCAAAAAGTAAAGATACATGGGAATGTGAATTGAGAAAACTTCAAAAGATTCCAAATATGGAAATTCACAAGGTATTAAAATTAAGTTATGATGGATTGGATCGTTCTCAGCAGGACATATTTCTAGACATTGAATGCTTCTTCAAAGGAAAAGCAAGAGATTATGTAACAAGTGAATTGGAAGCTTTTGATTTCTTTCCAGCATCTGGTATAGAAGTACTTTTAGATAAAGCTCTTATAACACTTTCATATGGCATTGTGATAGAAATGCATGACTTGATACAGGAAATGGGTCGAGAAATTGTTCACCAAGAGTCAATCAAAGACCTTGAAAGACGAAGTCGATTGTGGAGACATGAGGAAGTGCTTGATGTATTGAAATATAATAGGGGAACTAATGTTGTTGAGGGCATAATTTTGGATTTGGATAAACTTGTAATGCTTTGCATGACTGATTGCAAGCTTAAAAAGCTTTGGGACGGGGTTCAGAATCTTGTGAATTTAAAAGAATTTGACCTTCACGACTCCGGATACATGATTGAGATCCCAGACTTATCGAAGGCAGAAAAACTTGAAAAAGTAAATCTTTATGTATGTTATTCGTTGCGTCAGCTCCATCCATCTATGTTATCTCTTCCCAAGCTTACAGATTTAGATTTATGTAGTTGCGTTAAGATTGAAAGTCTTCATGTTCATTCAAAATCTCTCAGTGTACTGGGTCTCAATGGTTGTTCATATCTTGAGGAAATGACAGAACAAATCTTGTCTTCGGAAGAGTTAGACCTACGTGGAAATGTTGAAAGCCTATCTTCAAACATGAAAAACCTTTCAATGTTGAGAGAGCTTTGGTTAAATGATTGCATCACTCTCATGTCTCTGCCGAAGCTTCCACCATCCCTAGAAAGGATGAGTGCCTATAACTGCATTTTACTGGAGACAGACATCACTCAACGACTAGTGTTAGAACACATGCTACAGAGCCGCATACCCTACTTACACCAACAATATCTTAATGATCCTAACTTCATAGACAATGATTATTTCTTCTTCCGGGGAGGCTATGTCATTGAAGAGTGTGGGTTTCGGGAGGGAGAGAGGTCAATAACTATTCCTTATCTTCCAAAATCTGACCTGTTCGGTTTCATTTCTTACATCATTATTTCTTACAGACCTAATGATGACAATGATGATGATGATGTTGATGTTGATTATTGGAAGGATCATGGTTGGGATGATACAGTTTCAATAGATTATCAAGATGGCATACAGGTCTGCCAAAAAATGATAAATATACAATAG 2295 0.3691 MAEQMISAVASSSNYSKKYDVFLSFRENYASSKWCLGELSKIMECKKDKGQIVIPVFYNIDPSHVRKQTGSYEQAFAKHEGEPRCNKWKAILTEVANLAGWDFQTYRTEPEFLKDIVEDILQKLAPRYPNQRKGLVGIEESYKQIESILKIGSSEVKTLGIWGMGGLGKTTLTTALYDKLSCEFEGHCFLANVREKSDKLEALRDELFSKLLKNKNHGFDNFDMHRLQRKKVFIVLDDVDTSEQLEKLIVEYDFLGPGSRVIVTTRNKQILSLVDEIYHVKDLSSHYSLQLFCLTAFGKKQPKDGFEDLSRRVISYCKGIPLALKVLGASLRSKSKDTWECELRKLQKIPNMEIHKVLKLSYDGLDRSQQDIFLDIECFFKGKARDYVTSELEAFDFFPASGIEVLLDKALITLSYGIVIEMHDLIQEMGREIVHQESIKDLERRSRLWRHEEVLDVLKYNRGTNVVEGIILDLDKLVMLCMTDCKLKKLWDGVQNLVNLKEFDLHDSGYMIEIPDLSKAEKLEKVNLYVCYSLRQLHPSMLSLPKLTDLDLCSCVKIESLHVHSKSLSVLGLNGCSYLEEMTEQILSSEELDLRGNVESLSSNMKNLSMLRELWLNDCITLMSLPKLPPSLERMSAYNCILLETDITQRLVLEHMLQSRIPYLHQQYLNDPNFIDNDYFFFRGGYVIEECGFREGERSITIPYLPKSDLFGFISYIIISYRPNDDNDDDDVDVDYWKDHGWDDTVSIDYQDGIQVCQKMINIQ 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03421 764 FunFam Disease resistance protein (TIR-NBS-LRR class) 284 366 - -
Pumo3g03421 764 Pfam TIR domain 26 136 IPR000157 GO:0007165
Pumo3g03421 764 Gene3D Ribonuclease Inhibitor 427 666 IPR032675 -
Pumo3g03421 764 Pfam NB-ARC domain 145 363 IPR002182 GO:0043531
Pumo3g03421 764 Coils Coil 190 210 - -
Pumo3g03421 764 PRINTS Disease resistance protein signature 563 579 - -
Pumo3g03421 764 PRINTS Disease resistance protein signature 317 331 - -
Pumo3g03421 764 PRINTS Disease resistance protein signature 226 240 - -
Pumo3g03421 764 PRINTS Disease resistance protein signature 158 173 - -
Pumo3g03421 764 Gene3D - 285 366 IPR042197 -
Pumo3g03421 764 SMART till_3 18 98 IPR000157 GO:0007165
Pumo3g03421 764 Gene3D - 125 284 IPR027417 -
Pumo3g03421 764 SUPERFAMILY L domain-like 449 649 - -
Pumo3g03421 764 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 101 IPR035897 -
Pumo3g03421 764 ProSiteProfiles TIR domain profile. 1 124 IPR000157 GO:0007165
Pumo3g03421 764 Gene3D - 21 124 IPR035897 -
Pumo3g03421 764 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 640 IPR044974 GO:0006952
Pumo3g03421 764 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 376 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03421 Pumo-Chr3 66844233 66847559 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03421 136 648 WRKY Transcription Factor Family AT5G45050 29.123 3.45e-59 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03421 - - gmx:100793798 816.609