Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03411 ATGACAACAGCAGAAGAAACTTCAAACTTGGATCTCATACGCCAACACCTCTTAGGTGAAAACAGCATCTCAGACTCCTTTTTCTCCAATCTCCACCACCACCATCCTGTGAAGCTTGAAGCCCCCTCATCACCAGAATTTGATTTCACCTCATACATCTCAGACAACAACACAAGCAGCTTCTTCACCTTCCTTGAAGGCTATGATTTGGTGGCAGACATGGAGTTTGTTGATCACAAGGCACTGAAGTCCACAACAACAATCCCCACAAAGGAGGTTAAGAAATGCAATTCTCCTGAGCCAGTGGCATCAGAAGAGAAGCCAAAGAAGTCAGAATATGATGATGCAAAGCGTTATAGGGGAGTTAGGAGAAGGCCATGGGGCAAGTTTGCTGCTGAAATCCGTGACCCTACAAGGAAAGGGACAAGGGTTTGGCTTGGAACTTTTGACAGTGAGATTGATGCTGCTAAGGCCTATGATTGTGCTGCTTTCAAGATGAGGGGTCAGAAGGCAATTCTGAACTTCCCTCTTGAGGCTGGAGAGTCTGATCCTAAGCCTAACAGTTGTGGCAGGAAAAGGAGAAGGGAGAGCCATGAATTGGAACAAGTCCAAGTTCATCATGGTGTGTCCTGA 633 0.4629 MTTAEETSNLDLIRQHLLGENSISDSFFSNLHHHHPVKLEAPSSPEFDFTSYISDNNTSSFFTFLEGYDLVADMEFVDHKALKSTTTIPTKEVKKCNSPEPVASEEKPKKSEYDDAKRYRGVRRRPWGKFAAEIRDPTRKGTRVWLGTFDSEIDAAKAYDCAAFKMRGQKAILNFPLEAGESDPKPNSCGRKRRRESHELEQVQVHHGVS 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03411 210 PANTHER DNA-BINDING DOMAIN 92 188 IPR044808 GO:0003700|GO:0009873
Pumo3g03411 210 MobiDBLite consensus disorder prediction 177 210 - -
Pumo3g03411 210 SMART rav1_2 118 182 IPR001471 GO:0003700|GO:0006355
Pumo3g03411 210 MobiDBLite consensus disorder prediction 185 203 - -
Pumo3g03411 210 Pfam AP2 domain 118 168 IPR001471 GO:0003700|GO:0006355
Pumo3g03411 210 ProSiteProfiles AP2/ERF domain profile. 118 176 IPR001471 GO:0003700|GO:0006355
Pumo3g03411 210 SUPERFAMILY DNA-binding domain 118 177 IPR016177 GO:0003677
Pumo3g03411 210 MobiDBLite consensus disorder prediction 93 116 - -
Pumo3g03411 210 Gene3D AP2/ERF domain 117 178 IPR036955 GO:0003700|GO:0006355
Pumo3g03411 210 MobiDBLite consensus disorder prediction 98 116 - -
Pumo3g03411 210 FunFam Ethylene-responsive transcription factor 2 117 178 - -
Pumo3g03411 210 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Pumo3g03411 210 PRINTS Ethylene responsive element binding protein signature 158 178 IPR001471 GO:0003700|GO:0006355
Pumo3g03411 210 CDD AP2 117 176 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03411 Pumo-Chr3 66548352 66549275 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03411 1 204 AP2-EREBP Transcription Factor Family AT5G07580 42.857 8.19e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo3g03411 AP2 1.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03411 - - gmx:100305726 350.517