Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03409 ATGCATAGTTCAATTTCACAATCTGATATTTGTATCACTGATTACCTTCTACCCCAAGAAGTTCAATTTCAATTTCAATTTCAAGTTCCTATGAGCAATAATAACATACCAATGAACCATACCAACCTTCAAATGCCTCAAATCACATCTTTCTCCAAGCCTCCAAGGTCCTCAAATCTAAGCAACCGCAAACCCTCCTTGAAAAACATCACAATACCTTCCATAACCTCAGGTCTTGCAACAGCTATGTCACAACAACAACACATGGAAACAACAACAACAACAATAGCTACAACCACCATGTATAACAACAATCAAGTTTCTTCATCTTCTTCTTCAGATGATACCAACAACACCACCAAAGAGGACAAGCATTATAGAGGGGTTAGAAGAAGGCCATGGGGCAAGTTTGCTGCAGAAATTCGTGACCCCAACAGAAAAGGCTCAAGGGTGTGGCTTGGAACCTTTGACACAGCCATAGAAGCTGCTAAGGCTTATGACAAAGCTGCTTTCAAGATGAGAGGGAGCAAAGCCATATTGAACTTCCCTTTGGAGGTTGGGGAGTCTGAAGAGTCATCAGTTTCAAGTTGCATCATCAAGGTTGGTGTGAAGAGGGAAAGAGAGGAAGGGAGTGAAGGGAACAACTATGTGGAGAGTAATAATTTTAGCAACAATAGTAATAGTAATAAGCATGTGAAGAAACAAGAGTGCTCTCCCAAAGCTGTTTGCCCTTTGACTCCATCATGTTGGAAAGGCTTTTGGGACACTGATGTTATGGGAACCATCTTTAGTGTGCCTCCTTTGTCACCAATATCTCCACTAATGGTTGTTTGA 834 0.4125 MHSSISQSDICITDYLLPQEVQFQFQFQVPMSNNNIPMNHTNLQMPQITSFSKPPRSSNLSNRKPSLKNITIPSITSGLATAMSQQQHMETTTTTIATTTMYNNNQVSSSSSSDDTNNTTKEDKHYRGVRRRPWGKFAAEIRDPNRKGSRVWLGTFDTAIEAAKAYDKAAFKMRGSKAILNFPLEVGESEESSVSSCIIKVGVKREREEGSEGNNYVESNNFSNNSNSNKHVKKQECSPKAVCPLTPSCWKGFWDTDVMGTIFSVPPLSPISPLMVV 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03409 277 PRINTS Ethylene responsive element binding protein signature 165 185 IPR001471 GO:0003700|GO:0006355
Pumo3g03409 277 PRINTS Ethylene responsive element binding protein signature 126 137 IPR001471 GO:0003700|GO:0006355
Pumo3g03409 277 SUPERFAMILY DNA-binding domain 125 185 IPR016177 GO:0003677
Pumo3g03409 277 ProSiteProfiles AP2/ERF domain profile. 125 183 IPR001471 GO:0003700|GO:0006355
Pumo3g03409 277 CDD AP2 124 183 IPR001471 GO:0003700|GO:0006355
Pumo3g03409 277 Pfam AP2 domain 125 175 IPR001471 GO:0003700|GO:0006355
Pumo3g03409 277 MobiDBLite consensus disorder prediction 103 127 - -
Pumo3g03409 277 PANTHER DNA-BINDING DOMAIN 88 233 IPR044808 GO:0003700|GO:0009873
Pumo3g03409 277 MobiDBLite consensus disorder prediction 214 231 - -
Pumo3g03409 277 SMART rav1_2 125 189 IPR001471 GO:0003700|GO:0006355
Pumo3g03409 277 MobiDBLite consensus disorder prediction 209 231 - -
Pumo3g03409 277 FunFam Ethylene-responsive transcription factor 2 124 185 - -
Pumo3g03409 277 Gene3D AP2/ERF domain 124 185 IPR036955 GO:0003700|GO:0006355
Pumo3g03409 277 MobiDBLite consensus disorder prediction 46 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03409 Pumo-Chr3 66512601 66513434 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03409 122 274 AP2-EREBP Transcription Factor Family AT5G51190 56.688 2.34e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pumo3g03409 AP2 5e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03409 K09286 - gmx:100795866 387.882