LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo3g03406	ATGGGCGTTGAGAACTACCACGTGATCGAGCTCGTCGGCGAGGGTTCCTTCGGAAAAGTGTACAAAGGAAGGCGCAAGCACACGGGACAGACCGTTGCGATGAAGTTCATAATGAAGCACGGGAAGACCGAGAAGGATATTCACAATTTAAGACAAGAAATCGAGATCTTAAGAAAGTTGAAGCATGGAAATATTATTCAAATGCTTGATTCCTTTGAAAGCCCGCAAGAATTTTGTGTTGTTACAGAATTTGCACAAGGTGAGCTATTTGAGATTCTTGAGGATGATAAGTGCCTTCCGGAAGAGCAAGTTCAAGCAATTGCAAAGCAATTGGTAAAAGCCTTACATTATTTGCATTCCAATCGGATCATCCATCGTGATATGAAGCCCCAAAATATTCTAATTGGTGCTGGATCTGTTGTCAAGCTTTGCGATTTTGGGTTTGCACGTGCAATGTCCACAAATACAGTTGTTTTGCGATCTATAAAAGGCACTCCATTGTACATGGCTCCAGAGCTCGTACGTGAACAACCATACAACCACACTGTAGATTTATGGTCTCTTGGTGTCATACTGTATGAGTTATTTGTTGGCCAACCACCATTTTACACAAATTCTGTATATGCTCTCATCAGACACATCGTTAAGGATCCTGTTAAATATCCAGATCGCATGAGTCCAAATTTCAAAAGCTTTTTAAAGGGTTTGCTTAACAAGGCACCAGAAAGTCGACTAACTTGGCCAGCTCTTATTGAACACCCATTTGTTAAAGAAACCTCTGATGAACTTGAGGCCAGGGAATTGCGAGAGATAAATGGTTCACACATGCACAGTGATGCAGCACGGATGGTTGAAGGAAAAACCATTCAAACTCCAACAAAAGGCAAAAACAATCACATGGCAGGTATGGAGGAGCATATTGCTTCACCGCTTCAGAGTGAAGTTCAGTTAAATAGTCCTAACTTAGACAGAGCCAATTCTTCAGTGCTTGATGAGTCCCCTGGATTTTCAAATCAAAATGTAGGAGAGTCAGGCTGCCAAAGATTGGACAGACTTGAAAACAACTCTCGCACAGTCAAAGGTGCAAAACTAATAGGTCAAGATAATGAAGCGTTGGGACATATTCTGCTACCACTGAAAAAATGGTCAAAAGGATCTCAAAATATTTGCAGTGATCAAGATGTTCCAGAATCAAACCAGTCATTGAGGATTCTCTCAAACCTAGTTGCAGCTGGTGCCTTCAATTCTAGTGGGCTAATAGATGAACTAATAAGAGAGCTCCTTGTGTTTACTGGATCTGTTATAGCCATGAAATCCTCTGAAGTTACTGACATGATGGCAAAGAGTTTTTCCATCACTAAAATTTTGCTAGATAATGGTGGAAGTTGCACTTCAAGCTCTTATCTAAGTCACTGGGTTGAATTTGTTGAGATCTATTCTCAGGTTGTAACCTCAAATAATGATGCATCTGGAAGAGTTCTGTATGAATCTAGTGGCTGCATTACAGTCATGCTGTCTAGAGTTGCTCAGGTGCTTAGATCATCTCCTCAAATTTCAGGCCAAGAGACACTAAATGAATCTGCTAACAGAATTTTAGACCATGCAAAAACAACGGGTTTAGTGGACCATTTGTGTCTATGTTTAGCCGCTTCAGGATCGAGTCTTATTACAGGTTCTTCCAATATGCTACGGGCTGCTTCTGAAGCTTGCAGAGCTGTCTGGTCTTTGATTAATGCACTGGATATACTTTTTATGAAAAAAAGTGCCATTCTGTTTCCCATTAATGCTTTGCGGAGTCATTCTTTGCATAGGATGGAAGTTGTGCATCATGAGCAAGATCTCTTGGATAAAGCAGATTCAACAAAAATTGTTGATGCAATGACAAGAGCATTCCTGAGATCTAAAGCTGTTCAGGTTGCTGTTTACTATTGTTTTCACCAACGACTTGAGTCTGCAATGAATTGTGGTCTTCAGCTTTTGTCAAGGTGCTGCCTACATAATGGAATTGTTCCTGCTCTCCTTTGTGGTCTTCCCAGTTCCCTTCCTGTGACTACTGTTGTTAGTGGTGGTGGTGATGGAACTATTGTTTCAGAAGTTTTCACTGTTTTATCATTATGCAGTTCCTCTGTTAACAAAGACACACAAAGTGTAGAACCAAGTAATGTCAAGTGCAAATTAACAAATCCTTCTGCTCTGGTTCGTCATTCATGTCTCCTCCTTGCAATAATTGCTCAGTGTTTGAAGTCAACTGGAAGAAATTCAGCAATTTTTATGCTCACTACCTCACCAAAGAAGCAGCTTGCTCGACTGTCAGTGCTTGCTCACCATATTTCTTCTGATGATAAAATAAAAGCCTCCATCGAGCCTCAAAGTGCATCAGCCATGTTGGCTCTGGCATCCATTCTATCCCTTGAATCTGGGGCTTTGGTTGAGTCTCCAATATCTGAAATTGCTATGCCTTTAATTCCTCGAACTTCTACACTAAGTGACCATCTTAAATTTTCATCTGGCAATGAAAATGAGTTGGACCCTTGCAACATTAGTGGGAAGCTCTCATATTGGCAAGGGGTAAGAGATGGGTGTGTTGGTCTTTTAGATTCCAGACTCAAGTGGGGAGGACCATTAGCTGTTCAGCAGTTGTGTGCAAGTGGTATTCCTCTACTTCTTATGGGCCTACTAGGCAATGATGTTTTAAATGCTTCTCATGGAAATGACCATGTAAATGATAGAGTTGGATTGTCTCCTATTGGTGTTGTATGGACAATTTCATCATTATGTCATTGTCTTTCTGGTGGTGCTTTGACTTATCGTCAAATTTTGATTAGGAATGAACATATTAAGCTCATTTCCAACTTGATATGTGATGTTCATATCAAGTTGGTGAAATGCTGGATTGGACCTGGTGGAGGGAGAGCAGGAGTCAGAGATCTAATAAATGCAGTGATAGATCTCTTAGCATTTCCTTTTGTTGCTCTGCAAAATGCACCTGGCTTGCCATCAGCCACTGCTTCTGTTAGCAGTGGGTTTCTTCTTAATATTGGCTCCCCTGGTCAGAGAGTATGCATGGAAGATAAGGGTATAGTTAAGGCAATTGAAGAAGACATGGGAAAATATATTAAGATCCTTGTAGAGGTGGGTGTGCCTGGTATTATCCTTCGATGCCTAGATCATATGGATTTGAATGATTTGGGCAGGCCTGTTGCTTTTCTGGCTAAAATGGTATGCCACCGACCTTTAGCAATCCAACTTGTGAGTAAAGGTCTTTTGGATCCAAATAGGATGAGAAAGTTGTTTGACTGTTCTGGCCCAAAAGAGGTCACGCTGGATGCTCTTATGATTATTTCTGATCTTGCTCGCATGGACAAGGGATTCTATGAGTACATTAAAGGTGCTTCTATTTTGGAGTTCTTGAAAGACTTTCTTTCGCACGAGGATCCCAATATGCGTGCCAAAGCTTGCAGTGCTCTTGGAAACATGTGTCGTCATAGTGCCTATTTTTATAGTTCACTTGCAAGACATCAAATTGTTGGTATCCTTATCGAAAGATGTTCTGATCCAGACAAACGAACACGGAAATTTGCTTGTTTTGCTATTGGAAATGCGGCTTACCACAATGAGTTGCTGTATGAAGAGCTGAGGAGATCGATTCCTCAGTTAGCAAATTTGCTACAAATGGCAGAGGAGGACAAGACTAAGGCAAATGCAGCAGGTGCGCTTAGCAATCTGGTTCGCAACTCTGACAAACTTTGTGAAGACATTGTGTCTAAAGGAGCGGTTCAGTCTCTGCTGAAACTAATTTCCGATTTTGCGGTATCAGCACTGAATCCAAGCAGAAACGATTCAGGAAACGAATCTCCTCTAAAGATAGCTCTCTTTTCCCTAGCAAAGATGTGTGCACATCCACTCTGCAGACAGTTCATCCGTTCATCGCCTTTGTTCCCTGTGATCGGAAGGCTTCAGCAGTCTCCAGAATCATCCATTTCCAAATATGCCTCTGTGATCATTAGCAAAGTTGCTGAACCTTGA	4026	0.4138	MGVENYHVIELVGEGSFGKVYKGRRKHTGQTVAMKFIMKHGKTEKDIHNLRQEIEILRKLKHGNIIQMLDSFESPQEFCVVTEFAQGELFEILEDDKCLPEEQVQAIAKQLVKALHYLHSNRIIHRDMKPQNILIGAGSVVKLCDFGFARAMSTNTVVLRSIKGTPLYMAPELVREQPYNHTVDLWSLGVILYELFVGQPPFYTNSVYALIRHIVKDPVKYPDRMSPNFKSFLKGLLNKAPESRLTWPALIEHPFVKETSDELEARELREINGSHMHSDAARMVEGKTIQTPTKGKNNHMAGMEEHIASPLQSEVQLNSPNLDRANSSVLDESPGFSNQNVGESGCQRLDRLENNSRTVKGAKLIGQDNEALGHILLPLKKWSKGSQNICSDQDVPESNQSLRILSNLVAAGAFNSSGLIDELIRELLVFTGSVIAMKSSEVTDMMAKSFSITKILLDNGGSCTSSSYLSHWVEFVEIYSQVVTSNNDASGRVLYESSGCITVMLSRVAQVLRSSPQISGQETLNESANRILDHAKTTGLVDHLCLCLAASGSSLITGSSNMLRAASEACRAVWSLINALDILFMKKSAILFPINALRSHSLHRMEVVHHEQDLLDKADSTKIVDAMTRAFLRSKAVQVAVYYCFHQRLESAMNCGLQLLSRCCLHNGIVPALLCGLPSSLPVTTVVSGGGDGTIVSEVFTVLSLCSSSVNKDTQSVEPSNVKCKLTNPSALVRHSCLLLAIIAQCLKSTGRNSAIFMLTTSPKKQLARLSVLAHHISSDDKIKASIEPQSASAMLALASILSLESGALVESPISEIAMPLIPRTSTLSDHLKFSSGNENELDPCNISGKLSYWQGVRDGCVGLLDSRLKWGGPLAVQQLCASGIPLLLMGLLGNDVLNASHGNDHVNDRVGLSPIGVVWTISSLCHCLSGGALTYRQILIRNEHIKLISNLICDVHIKLVKCWIGPGGGRAGVRDLINAVIDLLAFPFVALQNAPGLPSATASVSSGFLLNIGSPGQRVCMEDKGIVKAIEEDMGKYIKILVEVGVPGIILRCLDHMDLNDLGRPVAFLAKMVCHRPLAIQLVSKGLLDPNRMRKLFDCSGPKEVTLDALMIISDLARMDKGFYEYIKGASILEFLKDFLSHEDPNMRAKACSALGNMCRHSAYFYSSLARHQIVGILIERCSDPDKRTRKFACFAIGNAAYHNELLYEELRRSIPQLANLLQMAEEDKTKANAAGALSNLVRNSDKLCEDIVSKGAVQSLLKLISDFAVSALNPSRNDSGNESPLKIALFSLAKMCAHPLCRQFIRSSPLFPVIGRLQQSPESSISKYASVIISKVAEP	1341

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo3g03406	1341	Pfam	Protein kinase domain	6	256	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo3g03406	1341	FunFam	Aurora kinase A	1	88	-	-
	Pumo3g03406	1341	FunFam	Serine/threonine-protein kinase TIO	1068	1337	-	-
	Pumo3g03406	1341	FunFam	Serine/threonine-protein kinase 36	3	318	-	-
	Pumo3g03406	1341	SUPERFAMILY	Protein kinase-like (PK-like)	4	257	IPR011009	-
	Pumo3g03406	1341	ProSitePatterns	Protein kinases ATP-binding region signature.	12	39	IPR017441	GO:0005524
	Pumo3g03406	1341	ProSiteProfiles	Protein kinase domain profile.	6	256	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo3g03406	1341	Gene3D	-	1037	1338	IPR011989	-
	Pumo3g03406	1341	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	123	135	IPR008271	GO:0004672\|GO:0006468
	Pumo3g03406	1341	SMART	serkin_6	6	256	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo3g03406	1341	Coils	Coil	40	60	-	-
	Pumo3g03406	1341	Coils	Coil	1209	1229	-	-
	Pumo3g03406	1341	SMART	arm_5	1245	1299	IPR000225	GO:0005515
	Pumo3g03406	1341	SMART	arm_5	1205	1244	IPR000225	GO:0005515
	Pumo3g03406	1341	SMART	arm_5	1121	1161	IPR000225	GO:0005515
	Pumo3g03406	1341	CDD	STKc_STK36	4	256	-	-
	Pumo3g03406	1341	Gene3D	Transferase(Phosphotransferase) domain 1	2	321	-	-
	Pumo3g03406	1341	SUPERFAMILY	ARM repeat	1034	1338	IPR016024	-
	Pumo3g03406	1341	PANTHER	PROTEIN KINASE RELATED	3	1338	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo3g03406	Pumo-Chr3	66424393	66437903	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo3g03406	1	269	AGC Kinase Gene Family	AT3G08720	37.906	2.32e-47	175

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	ULK_Fused	Pumo3g03406		Pkinase	1e-77	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo3g03406	K06228		-	gmx:100792102	2462.95