Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03405 ATGCAACCCATACAAGATTCATCTGGTTCATCTGCAACTCAGGCTGCAAAGGAGGAAATGGATTCTCGGTCCATCTATGTTGGAAATGTTGACAATACGTGTACAGCTGAAGAACTCAGACAACATTTTAAAGCATGTGGAATTGTGAACAGAGTGACAATCCTGACTACCAAATATGGTCGACCAAAAGGATGTGCTTATGTTGAGTTTCTTGAAGTTGATGCAGTTCACAACGCTCTCATTTTAAATGAATCGGAACTTAATGGTCGAAAACTGAAGGTCTGTGCTAAGCGTACAAACTTTCCTGGAATGAAACAGTGCCATGGAAGAAGACCATTCGGTTTAAGATTTAGAAGGCCATCATTCCATGCTCAGTCTAGTTATGGAAGGTTTCCAAGGTTTAGCCGACCCATGCGATACAGGCCATACTAG 432 0.419 MQPIQDSSGSSATQAAKEEMDSRSIYVGNVDNTCTAEELRQHFKACGIVNRVTILTTKYGRPKGCAYVEFLEVDAVHNALILNESELNGRKLKVCAKRTNFPGMKQCHGRRPFGLRFRRPSFHAQSSYGRFPRFSRPMRYRPY 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03405 143 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 8 106 - -
Pumo3g03405 143 MobiDBLite consensus disorder prediction 1 20 - -
Pumo3g03405 143 SUPERFAMILY RNA-binding domain, RBD 14 123 IPR035979 GO:0003676
Pumo3g03405 143 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 93 IPR000504 GO:0003723
Pumo3g03405 143 SMART rrm1_1 24 95 IPR000504 GO:0003723
Pumo3g03405 143 MobiDBLite consensus disorder prediction 1 18 - -
Pumo3g03405 143 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 99 IPR000504 GO:0003723
Pumo3g03405 143 CDD RRM_II_PABPs 24 95 - -
Pumo3g03405 143 Gene3D - 17 103 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03405 Pumo-Chr3 66130981 66209099 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03405 24 70 Eukaryotic Initiation Factors Gene Family AT2G36660 40.426 1.46e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03405 K14396 - vvi:100242522 202.986