Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03402 ATGGCTATGTTTGATCTCAACGTTGACATCAACCACTGTGATGCTGATGCTGATGCTGATGCTGGCTCAAGGTGTGCTCAAAAGAGGGTTCAACTGCAAAGTTTCCCACCTGAAATCTCAGATTCCAGGACCTCCAACTCCTCTGTGTGGAATCCTGCAGAGGAAGATTCCTCACACAACTCCTCTCCCTTGATTTTTGACATACTGAAGAAAGAGAGGGATGAGTCAGAGTTTGATGCTGCCACTGGAAGGGTCAATAGGGAGCAAAACATGGCACCACAAGAGGCAAAAGAGATAGTGACAAGGACCCTTTTCCCTGTGACTGCTGCTGATAAAGGAGGTATAGTGCCTGATTTCAAATTGGGGTTGTGGGGGAAGACTAAATGGCTGAACTTGTCCTTTCCAGAGCCTGATGAACAAAGTGGACTGAGAACCTTACAGCAGAAGCTACCTCATGTGAGGAAAAACAGGAGAGGACCAAGGTCTCGCAGCTCGCAGTACCGCGGTGTCACCTTCTACCGCAGGACTGGTAGATGGGAGTCACATATTTGGGATTGTGGGAAGCAGGTCTATTTGGGTGGATTTGACACTGCTCAAGCTGCTGCAAGAGCATATGATAGTGCTGCAATAAAGTTTCGGGGAGTAGATGCTGATATAAACTTTACTTTGAGTGATTATGAGGAGGATTTGCAGCAGATGAGAGGCTTGAGTAAGGAAGAGTTTGTGCTCTTACTTCGTCGACAAATCAATGGAGCCTCGAGGAGAAGTTCAACATACAGAGGTGCATTGGCCCTTCCCAAAGAGGCTCAAGGAGAACCACGAATGGAACCATTTATTGGCAAGCCATTCTATCCCAAGTCATCCATCAAGTGTGATGATGGAAAAGTGGAGGGCAGTTTTAAGCCCTGTTCTTATAAGGGAGAAATAATTGCAAATTCCAGCATAGCAGGCAATTGCCATAATCTTGATTTGAGCCTAGGGATTTCTCCATCTTCTAAAAGACTGAAGAAGAATGACTATGGAGGAGGGTATTCCTTTGGATGCACTACAGCTTGTAAGATACCCGAGGAAAGAGGAACAATGGAGAGGGCCATGGTGGACAGAATAAGAAATGTTCCTATGCAAAATTTTTCCAACTTGCAGGCTTGGCAACTTTGCAGCAATGGCAGCATTGTCCCAAGGCCATTGCAACCAAATGCAGCATCATCAGGATTCGTCTCTTCTTCTAGCTGTCTCATCAGCCACACTTCCAATCAGCACCCATATTAA 1269 0.4594 MAMFDLNVDINHCDADADADAGSRCAQKRVQLQSFPPEISDSRTSNSSVWNPAEEDSSHNSSPLIFDILKKERDESEFDAATGRVNREQNMAPQEAKEIVTRTLFPVTAADKGGIVPDFKLGLWGKTKWLNLSFPEPDEQSGLRTLQQKLPHVRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAQAAARAYDSAAIKFRGVDADINFTLSDYEEDLQQMRGLSKEEFVLLLRRQINGASRRSSTYRGALALPKEAQGEPRMEPFIGKPFYPKSSIKCDDGKVEGSFKPCSYKGEIIANSSIAGNCHNLDLSLGISPSSKRLKKNDYGGGYSFGCTTACKIPEERGTMERAMVDRIRNVPMQNFSNLQAWQLCSNGSIVPRPLQPNAASSGFVSSSSCLISHTSNQHPY 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03402 422 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 96 281 - -
Pumo3g03402 422 CDD AP2 165 224 IPR001471 GO:0003700|GO:0006355
Pumo3g03402 422 SMART rav1_2 166 228 IPR001471 GO:0003700|GO:0006355
Pumo3g03402 422 FunFam AP2-like ethylene-responsive transcription factor 165 224 - -
Pumo3g03402 422 MobiDBLite consensus disorder prediction 34 62 - -
Pumo3g03402 422 Pfam AP2 domain 166 214 IPR001471 GO:0003700|GO:0006355
Pumo3g03402 422 SUPERFAMILY DNA-binding domain 165 223 IPR016177 GO:0003677
Pumo3g03402 422 ProSiteProfiles AP2/ERF domain profile. 166 222 IPR001471 GO:0003700|GO:0006355
Pumo3g03402 422 Gene3D AP2/ERF domain 165 223 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03402 Pumo-Chr3 66005589 66011227 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03402 99 334 AP2-EREBP Transcription Factor Family AT4G36920 48.669 1.17e-54 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pumo3g03402 AP2 3.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03402 K09284 - gmx:100776138 698.738