Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03330 ATGACAAGGGTTGTCCAGATGAGTGTTGATGGTGACAGCAAAGAGCTGAAAGAACTGAATCAGCGGTTACGAGATGGGAAGAAGATTGCTGATGGGGAACGTGGTTTATGCGAGGGTGATGAAGTAAAATGTAATGGAGTAGCTGAAGAAGTTAAGGTTGGACAGGGGGGGACTGTGGAGTCCTCCTCTGCCCAGCAGCATATACCACAGCCTCAAGGGGCAATAATTTGTTGGGAGAGATTTTTGCATATTAGATCCCTTAAGGTCTTGCTTGTGGAGAATGATGACTCTACTCGTCATGTTGTCACTGCACTGCTTCGCAATTGTAGTTATGAAGTTATTGAAGCAGCAAACGGATTGCAAGCTTGGAAGATATTGGAGGATTTAACCAATCATATTGATCTCATTTTAACTGAGGTGGCAATGCCTCCTGGCTTATCAGGCATTGGTCTTCTATACAAGATTATGGGCCACAAAACCCGGAAAAATATTCCAGTAGTTATGATGTCATCTCATGATTCTATGGGTTTAGTCTTTAAGTGTTTGTCAAAGGGTGCTGTTGACTTTCTAGTTAAACCCATACGGAAGAATGAGCTTAAAAACCTGTGGCAGCATGTTTGGAGAAGATGTCACAGTTCTAGTGGGAGTGGAAGTGAAAGTGGCACACAAACCCAGAAGTCTGTAAAATCAAAGAGTGTTGAGAAGTCTGATAATAATTTTGGAAGCAATGACGAAGATGATAATGGAAGTATAGGCCTGAATAATGGGGATGGAAGTGACAACGGTAGTGGCACTCAGAGTTCATGGACCAAACGTGCTGTAGAAGTTGATAGTCCTAAACCAGTTTCCCAGTGGGATCAAATAGCTGAGTGCCCTGACAGTACCTGTGCTCAAGTTGTTCACTCCAATGCTGAAATGGGTGGGAACAAGGTGGTTCCTCTAGCTGCAAAGGAGTGTCCAGAACAGAAGGAACAACTTGTCAAAACTGCAGGTTCTGAACATAGCAATGCACCTCATGCCGGCCCCTCTAAATTCAATGAGCAACTTAATAGAGGACAACTGGACCGTAATTGTGAAAATCAATCTAGCAAGCTAAGGTGCAAAGGTTTATCACTGTCTGATGCCATTACTAGCACTTCTGATTCTCAGATGCATAGTGGAGAATTTGAAGCCCTAGATAAAAGATCCAAGTCCTCAGATATTGAAAATAAAGGTACTAATAATGATGAAGAATTGCCATCTCTTGAGCTCAGTTTAAAGAGGCTCAGAGGAGTTAAAGATGCTGGTATTATAATTCAGGATGACCGGAATGTTTTAAGACGTTCTGATCAGTCTGCTTTCTCAAGGTACAATGCAGCCTCTAACACTAAGAAATCTCCCACTGGATGTGTTGGAAGCAATTCTCCACATAATAATAGCTTAGAAGTTACAAAGAAAGATTCATCTCGTGATATTCAATCTCATTCTAGCGGCAATCCTCCTAACCAAAACTCAAATGGTGCTAGCAATAACATTGATATGGGTTCCACTACGAATAATGCTTATGCTAAATCTGCAGTTATAAGTGAGCCAGCAGTGGCATCAACAACCAAATGTTTGTATCAAACATCTGCTTTCCAGCCTGTAAAAAACAACCTTGTTTGTACCTCTCAACAAGTTGTGTTACATAGTACTGAAGATATGACGGCAACAATGCTGGTACCACCTAAAGTAGACAGACATAAAGATTCTGCAGCTCCGGACTTCCATCTCCATTATGAAAACCATAACTGTGTTGCTGACAACATGAAGCACCAGCTGCCACCTGATCATGATGCTGAATCTGTAAAGAAAATGGCTACTGCTGCTCCACATTGTGGGTCATCAAATGTGGTTGAAGTGCTAGTTGAAGGTAATGTTGGAAACAACAGTATCAATAGAAGTGCTTCAGGCAGCAACAATGGAAGCAATGGACAAAATGGGAGCAGCACAGCAGTTAATGCTGGACGGACAAACATGGAAAGCAACAATGGACTCACTGGGAATAGTGGCAATGGTGATGCTAGCGGAAGTGGAAGTGCCAACAGAGTAGTTCAAAACAAGACTTCTCAAAGGGAAGCGGCCTTAACTAAATTTCGCCAAAAGAGAAAAGAGAGAAAGGAGAGGTGCTTTCATAGAAAGGTTCCATATCAGAGCAGAAAGAGATTAGCTGAACAACGACCTCGATTTCGTGGACAATTTGTGCGACAGTCCTCTAACGAAAATGCAAGTGAGGCAACAACAGATAGCTGA 2271 0.4227 MTRVVQMSVDGDSKELKELNQRLRDGKKIADGERGLCEGDEVKCNGVAEEVKVGQGGTVESSSAQQHIPQPQGAIICWERFLHIRSLKVLLVENDDSTRHVVTALLRNCSYEVIEAANGLQAWKILEDLTNHIDLILTEVAMPPGLSGIGLLYKIMGHKTRKNIPVVMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKSVEKSDNNFGSNDEDDNGSIGLNNGDGSDNGSGTQSSWTKRAVEVDSPKPVSQWDQIAECPDSTCAQVVHSNAEMGGNKVVPLAAKECPEQKEQLVKTAGSEHSNAPHAGPSKFNEQLNRGQLDRNCENQSSKLRCKGLSLSDAITSTSDSQMHSGEFEALDKRSKSSDIENKGTNNDEELPSLELSLKRLRGVKDAGIIIQDDRNVLRRSDQSAFSRYNAASNTKKSPTGCVGSNSPHNNSLEVTKKDSSRDIQSHSSGNPPNQNSNGASNNIDMGSTTNNAYAKSAVISEPAVASTTKCLYQTSAFQPVKNNLVCTSQQVVLHSTEDMTATMLVPPKVDRHKDSAAPDFHLHYENHNCVADNMKHQLPPDHDAESVKKMATAAPHCGSSNVVEVLVEGNVGNNSINRSASGSNNGSNGQNGSSTAVNAGRTNMESNNGLTGNSGNGDASGSGSANRVVQNKTSQREAALTKFRQKRKERKERCFHRKVPYQSRKRLAEQRPRFRGQFVRQSSNENASEATTDS 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03330 756 SMART REC_2 87 203 IPR001789 GO:0000160
Pumo3g03330 756 Pfam Response regulator receiver domain 89 201 IPR001789 GO:0000160
Pumo3g03330 756 MobiDBLite consensus disorder prediction 377 412 - -
Pumo3g03330 756 ProSiteProfiles CCT domain profile. 701 743 IPR010402 GO:0005515
Pumo3g03330 756 MobiDBLite consensus disorder prediction 636 756 - -
Pumo3g03330 756 MobiDBLite consensus disorder prediction 328 347 - -
Pumo3g03330 756 MobiDBLite consensus disorder prediction 212 284 - -
Pumo3g03330 756 MobiDBLite consensus disorder prediction 486 509 - -
Pumo3g03330 756 MobiDBLite consensus disorder prediction 243 273 - -
Pumo3g03330 756 MobiDBLite consensus disorder prediction 708 723 - -
Pumo3g03330 756 SUPERFAMILY CheY-like 85 212 IPR011006 -
Pumo3g03330 756 FunFam Two-component response regulator-like PRR37 87 246 - -
Pumo3g03330 756 CDD psREC_PRR 89 193 - -
Pumo3g03330 756 Gene3D - 86 239 - -
Pumo3g03330 756 MobiDBLite consensus disorder prediction 636 700 - -
Pumo3g03330 756 MobiDBLite consensus disorder prediction 387 412 - -
Pumo3g03330 756 Pfam CCT motif 698 743 IPR010402 GO:0005515
Pumo3g03330 756 MobiDBLite consensus disorder prediction 449 475 - -
Pumo3g03330 756 MobiDBLite consensus disorder prediction 738 756 - -
Pumo3g03330 756 ProSiteProfiles Response regulatory domain profile. 88 207 IPR001789 GO:0000160
Pumo3g03330 756 PANTHER TWO-COMPONENT RESPONSE REGULATOR 87 388 IPR045279 GO:0009736
Pumo3g03330 756 MobiDBLite consensus disorder prediction 449 509 - -
Pumo3g03330 756 MobiDBLite consensus disorder prediction 212 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03330 Pumo-Chr3 61139218 61158590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03330 164 745 Response Regulator Gene Family AT5G02810 46.645 1.07e-114 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Pumo3g03330 Response_reg 8.1e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03330 K12129 - gmx:100796933 1276.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03330 3 61139218 61158590 Pumo3g03330 3 61139218 61158590 ECH