Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03325 ATGCCGCCGAAGCAGCAATCAAAAGCTGATTTAGCGAAGAAGCAGAAGGTTGTAGAGGACAAAACCTTCGGTCTCAAGAACAAAAACAAGAGCAAAAACGTTCAGAAATATGTCCAGAACCTCAAGCAATCCGTGCAGCCCAGGCCCGATCCCACCAAAGTCGATGCCAAGAAAAAGAAGGAGGAGGAGAAGGCCAAGGAGAAGGAGCTAAATGATTTGTTCAAAATCGCCGTTACTCAGCCTAAAGTACCAGTTGGTGTTGATCCCAAGTCCATATTATGTGAGTTTTATAAAGTGGGGCAGTGTGCCAAGGGCTTCAAATGCAAGTTCTCGCATGATTTGAATGTTCAGAGGAAAGGGGAAAAGATTGACATTTACAGTGATAAGCGTGACCAGGAAACAATGGAGGATTGGGATCAAGAGACCTTGGAGAAGGTGGTGGAGTCGAAGAAAACTGAGTATAATCAGAATAAACCAACTGACATAGTCTGTAAATACTTTTTGGATGCAGTAGAAAAGAAGCAATATGGTTGGTTTTGGGACTGCCCCAATGGTGGTAAGAATTGCCATTATAGACATGCTCTTCCACCTGGTTATGTTTTGAAATCTCAAATGAAGGCTTTGTTAGAGGAGGAAAGTGAAAAAATATCAATTGAAGAGGAGATTGAAAATCAGCGTGCCAAAGTGGCAACTACAACTCCTATGACTCCTGAGTTATTCTTTGAATGGAAGAAGAAGAAGATAGAAGAGAGAGATGCCAATATAGCTGCACAACAGGCAGAGAGGGCTAAGAATGATCGCATGAGTGGTCGGGAGCTATTTTTGTCAAATGCTAGCTTGTTTGTGGATGATGCAGAAGCATATGATGTGTACCAAAGAGAACCAGAATCTTATGAAACTGAACAGAATGGGAATGGGAATGCTGCTGATGGTCCAAGCACCTCAGCAACAGCCGGTGCTGATGATGAAGCTCCTGATGACATAGATGATGATGACGATGAGTTGGACATGGATGAGTTAGATGAATTGGAAGCCAGCTTATCCAAGACCTCAATCCAAATAAAGGAAACAGGAGCTGAAGCTTAA 1086 0.4282 MPPKQQSKADLAKKQKVVEDKTFGLKNKNKSKNVQKYVQNLKQSVQPRPDPTKVDAKKKKEEEKAKEKELNDLFKIAVTQPKVPVGVDPKSILCEFYKVGQCAKGFKCKFSHDLNVQRKGEKIDIYSDKRDQETMEDWDQETLEKVVESKKTEYNQNKPTDIVCKYFLDAVEKKQYGWFWDCPNGGKNCHYRHALPPGYVLKSQMKALLEEESEKISIEEEIENQRAKVATTTPMTPELFFEWKKKKIEERDANIAAQQAERAKNDRMSGRELFLSNASLFVDDAEAYDVYQREPESYETEQNGNGNAADGPSTSATAGADDEAPDDIDDDDDELDMDELDELEASLSKTSIQIKETGAEA 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03325 361 Gene3D - 87 203 - -
Pumo3g03325 361 Coils Coil 53 73 - -
Pumo3g03325 361 Coils Coil 246 266 - -
Pumo3g03325 361 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 358 - -
Pumo3g03325 361 SMART c3hfinal6 88 114 IPR000571 GO:0046872
Pumo3g03325 361 SMART c3hfinal6 158 195 IPR000571 GO:0046872
Pumo3g03325 361 ProSiteProfiles Zinc finger C3H1-type profile. 158 196 IPR000571 GO:0046872
Pumo3g03325 361 MobiDBLite consensus disorder prediction 297 314 - -
Pumo3g03325 361 MobiDBLite consensus disorder prediction 322 337 - -
Pumo3g03325 361 ProSiteProfiles Zinc finger C3H1-type profile. 88 115 IPR000571 GO:0046872
Pumo3g03325 361 MobiDBLite consensus disorder prediction 40 64 - -
Pumo3g03325 361 SUPERFAMILY CCCH zinc finger 88 113 IPR036855 GO:0046872
Pumo3g03325 361 Coils Coil 208 228 - -
Pumo3g03325 361 Gene3D - 204 279 - -
Pumo3g03325 361 Coils Coil 340 360 - -
Pumo3g03325 361 Pfam DRG Family Regulatory Proteins, Tma46 215 294 IPR032378 -
Pumo3g03325 361 MobiDBLite consensus disorder prediction 294 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03325 Pumo-Chr3 61108978 61112715 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo3g03325 DFRP_C 5.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03325 - - gmx:100778701 627.861