Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03323 ATGAACTCCCCCAACACTTCGAATTCTCAGTCAATGGCGGCAGCAGCACCGAGTGATGGGTCTGGCAAGAAGGTAAGAAAGCCTTACACCATAACCAAGTCCAGAGAGAGTTGGACTGAGGAAGAGCATGACAAGTTTCTCGAAGCTCTTCAACTATTTGACAGGGATTGGAAGAAAATTGAAGATTTTGTTGGTTCAAAAACAGTTATTCAGATTCGAAGCCATGCTCAGAAATACTTCTTGAAAGTTCAAAAGAATGGGACTGTGGCACATGTGCCTCCTCCTCGTCCTAAGCGCAAAGCAGCTCATCCTTACCCGCAAAAGGCATCAAAAAATGTTTTGGTGCCACTACCAGCTTCCATTGGTTATGCTTCTTCAGCAAATTCGCTTGCACCTGGGTTTGCCACATGGGATGAAACTTCCCTGCTGATGAATGCCGGAGCCGGTAAATCCATGACCTGTCAGGATGAACTCAACAACCTTCATGGAAATGAAGCTGATATTGGATCAAAGGGGATAACACAGATTACCAACAGCAGTCTTAGTGGTGTTGGAAATTCTACTAGAACGCTACCGACTTCTGAGATACCAAAGCAAGGGAAACAAGCTCCGGTGCTTCATGGTTTGCCAGATTTTGCTGAAGTTTACAGTTTCATTGGAAGTGTATTTGATCCAGAAACAAACGATCATGTCCAGAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGTTAATGAGAAACCTCACTGTCAACTTGTCTAGCCCTGACTTTGAACCCATCAAGAAGGTAATGTCAACATATGATGTCAATACCATGGCAGTAGGAATTGATGTCAAGAAGCAGACAAATGATCTATCATGTCAAACCGCTTAA 885 0.4305 MNSPNTSNSQSMAAAAPSDGSGKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAAHPYPQKASKNVLVPLPASIGYASSANSLAPGFATWDETSLLMNAGAGKSMTCQDELNNLHGNEADIGSKGITQITNSSLSGVGNSTRTLPTSEIPKQGKQAPVLHGLPDFAEVYSFIGSVFDPETNDHVQKLKEMDPINFETVLLLMRNLTVNLSSPDFEPIKKVMSTYDVNTMAVGIDVKKQTNDLSCQTA 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03323 294 NCBIfam myb-like DNA-binding domain, SHAQKYF class 33 82 IPR006447 GO:0003677
Pumo3g03323 294 ProSiteProfiles SANT domain profile. 33 86 IPR017884 -
Pumo3g03323 294 CDD SANT 37 80 IPR001005 -
Pumo3g03323 294 SUPERFAMILY Homeodomain-like 29 85 IPR009057 -
Pumo3g03323 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 84 IPR017930 -
Pumo3g03323 294 PANTHER SWI/SNF COMPLEX-RELATED 8 257 - -
Pumo3g03323 294 FunFam protein REVEILLE 6 isoform X1 37 85 - -
Pumo3g03323 294 ProSiteProfiles Myb-like domain profile. 30 80 IPR001005 -
Pumo3g03323 294 MobiDBLite consensus disorder prediction 1 16 - -
Pumo3g03323 294 Gene3D - 38 85 - -
Pumo3g03323 294 SMART sant 34 82 IPR001005 -
Pumo3g03323 294 Pfam Myb-like DNA-binding domain 35 80 IPR001005 -
Pumo3g03323 294 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03323 Pumo-Chr3 61069737 61075821 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo3g03323 Myb_DNA-binding 4.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03323 - - gmx:100797466 543.117