Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03322 ATGGCCGCAGCCGCACGTCCTCTCGTCACCGTGCAGGCCCTCGAGGGCGACATGGCCACCGACGCCGCCGCCACCGTCCCCATCCCGGACGTCATGAAGGCCTCAATCCGCCCCGACATCGTTAACTTCGTCCACTCAAACATCTCCAAGAACAGCCGCCAGCCTTACGCCGTCAGCCGCCGCGCCGGCCACCAGACCTCCGCCGAGTCCTGGGGAACCGGCCGCGCCGTCTCCCGTATCCCTCGCGTCCCCGGCGGCGGAACCCACCGCGCCGGCCAGGGAGCCTTTGGCAACATGTGCCGTGGCGGCCGCATGTTCGCCCCGACCAAGATCTGGCGCCGCTGGCACAGGAAGATCAACGTGAACCAGAAGCGCTACGCCGTCGTCTCGGCCATCGCGGCCTCGGCCATCCCCTCCCTCGTCCTCGCCCGCGGCCACCGCATCGAGACCGTCCCCGAGCTTCCCCTCGTCGTCAGCGACTCCGCCGAGGGCGTCGAGAAAACCAAGGAAGCCATCAAAGTCCTCAAGCAGATCGGAGCCTTCAGCGACGCCGAAAAGGCGAAGGACAGCCGCAGCATTCGCCCCGGCAAGGGTAAAATGCGTAACCGCCGCTACATCTCCCGCAGGGGCCCACTCGTCGTGTACGGAACGGAAGGTGCCAAGGCCGTTAAGGCCTTCCGTAACGTCCCTGGCGTTGAGGTCGCCAATGTCGAGAGGCTTAACCTTCTGAAGCTCGCTCCCGGTGGACACCTTGGGAGGTTCGTGATTTGGACAAAGGGTGCTTTTGAGAAGCTGGACTCTATTTATGGGTCGTTCGATAAGCCCTCTGAGAAGAAGAAGGGGTACCTGCTCCCCAGGCCCAAGATGGTGAACTCGGACCTCTCCAGGATTATTAATTCTGACGAGGTTCAGTCCGTTGTGAGGCCCATTAAGAAGGATGTGAAGAGGGCCACGCTTAAGAAGAACCCGCTTAAGAACCTGAACTGTTTGCTGAAGCTGAATCCTTATGCCAAGACTGCTAAGAGGATGGCCCTTCTCGCTGAGGCACAGCGTGTTAAGGCCAAGAAGGAGAAGCTCGACAAGAAGAGGAAAACTGTCTCTAAGGAGGAAGCTTCTGCTATCAAGGCTGCTGGAAAAGCATGGTATCACACTATGGTGTCAGATTCTGATTATACAGAATTCGACAACTTTTCTAAGTGGTTGGGTGTTTCACAGTAA 1218 0.5936 MAAAARPLVTVQALEGDMATDAAATVPIPDVMKASIRPDIVNFVHSNISKNSRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAIPSLVLARGHRIETVPELPLVVSDSAEGVEKTKEAIKVLKQIGAFSDAEKAKDSRSIRPGKGKMRNRRYISRRGPLVVYGTEGAKAVKAFRNVPGVEVANVERLNLLKLAPGGHLGRFVIWTKGAFEKLDSIYGSFDKPSEKKKGYLLPRPKMVNSDLSRIINSDEVQSVVRPIKKDVKRATLKKNPLKNLNCLLKLNPYAKTAKRMALLAEAQRVKAKKEKLDKKRKTVSKEEASAIKAAGKAWYHTMVSDSDYTEFDNFSKWLGVSQ 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03322 405 Pfam 60S ribosomal protein L4 C-terminal domain 280 352 IPR025755 -
Pumo3g03322 405 Pfam Ribosomal protein L4/L1 family 27 266 IPR002136 GO:0003735|GO:0005840|GO:0006412
Pumo3g03322 405 Coils Coil 342 369 - -
Pumo3g03322 405 SUPERFAMILY Ribosomal protein L4 20 267 IPR023574 GO:0003735|GO:0005840|GO:0006412
Pumo3g03322 405 PANTHER 60S RIBOSOMAL PROTEIN L4 4 398 IPR045240 -
Pumo3g03322 405 FunFam 60S ribosomal protein L4 3 308 - -
Pumo3g03322 405 ProSitePatterns Ribosomal protein L1e signature. 120 146 IPR013000 -
Pumo3g03322 405 MobiDBLite consensus disorder prediction 54 73 - -
Pumo3g03322 405 Gene3D - 3 308 IPR023574 GO:0003735|GO:0005840|GO:0006412
Pumo3g03322 405 MobiDBLite consensus disorder prediction 54 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03322 Pumo-Chr3 61057082 61059687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03322 2 405 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 83.168 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03322 K02930 - gmx:100779764 751.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03322 3 61057082 61059687 Pumo3g03322 3 61057082 61059687 ECH