Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03318 ATGTCCGATGCTCCGGCTAGTCCAGGTGGCGGCGGCGGTGGCAGCCACGAGAGCGGCGAGCACAGTCCCCGCTCCAATTTCCGGGAGCAGGACCGGTTCCTCCCCATCGCCAACATCAGCCGCATCATGAAGAAAGCGCTTCCTCCCAATGGAAAAATCGCTAAGGACGCGAAGGAAACCGTGCAGGAATGCGTCTCCGAGTTCATCAGTTTCATCACCAGCGAAGCGAGCGATAAGTGTCAGAGAGAGAAGAGAAAGACCATTAACGGCGACGATTTGCTTTGGGCAATGGCCACTTTAGGTTTCGAGGAGTATATTGATCCGCTCAAGATTTACCTCGCCGCTTATAGAGAGGGTGATTCAAAGGGTTCGGCCAAGGGTGGAGATGCGTCTGCTAAGAGAGATGTTTATCCGAGTCCTAATGCCCAGCTTGCTCATCAAGGTTCTTTCTCACAAGGCGTTAATTATACGAATTCTCAGCCCCAGGCTCAACATATGATAGTTCCCATGCAAGGCCTAGGAGTAGATATTGATCCTCCTTCAGTGTTTGACATTGAAAAGAATATTTGTTACTCTGGAAATGGGGTTAACGTCAATGGTGCTAATCTTCAACAAGTCCACGTCAAGCTTGTTTTAATGTACGAGAATGCTTCCAAATGGCCTTGCTTGAGCGTGCTCGGGTACACCAGTGAGGCTCTTTTCCTTCTCCTAGACGTTGGTGGATGA 726 0.5014 MSDAPASPGGGGGGSHESGEHSPRSNFREQDRFLPIANISRIMKKALPPNGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEEYIDPLKIYLAAYREGDSKGSAKGGDASAKRDVYPSPNAQLAHQGSFSQGVNYTNSQPQAQHMIVPMQGLGVDIDPPSVFDIEKNICYSGNGVNVNGANLQQVHVKLVLMYENASKWPCLSVLGYTSEALFLLLDVGG 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03318 241 ProSitePatterns NF-YB/HAP3 subunit signature. 64 80 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pumo3g03318 241 PRINTS CCAAT-binding transcription factor subunit A signature 61 79 - -
Pumo3g03318 241 PRINTS CCAAT-binding transcription factor subunit A signature 99 117 - -
Pumo3g03318 241 PRINTS CCAAT-binding transcription factor subunit A signature 80 98 - -
Pumo3g03318 241 MobiDBLite consensus disorder prediction 1 31 - -
Pumo3g03318 241 SUPERFAMILY Histone-fold 30 128 IPR009072 GO:0046982
Pumo3g03318 241 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 33 97 IPR003958 -
Pumo3g03318 241 FunFam Nuclear transcription factor Y subunit B-3 22 145 - -
Pumo3g03318 241 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 18 152 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pumo3g03318 241 Gene3D Histone, subunit A 20 161 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03318 Pumo-Chr3 60999912 61003822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03318 11 172 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.964 7.89e-79 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pumo3g03318 CBFD_NFYB_HMF 1.3e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03318 K08065 - gmx:100791435 290.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03318 3 60999912 61003822 Pumo3g03318 3 60999912 61003822 ECH
Pumo5g03018 5 78204166 78206132 Pumo3g03318 3 60999912 61003822 PCT