Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03306 ATGGGAAGGAAGGGAAGTTGGTTTTCTACTGTGAAGAAAGCTCTAAGCCCTGAGCCAAAGGAGAAGAACGATCAGAAAACAAGTAGATCAAAGAAGAAATGGTTTGGGAAGCAAAAATTGCAGACTTCAGAATCACCCTCAGAAACTGATAAAGCACCTCCTCTTCCTCCACCTGAGATTATTTTAACTTATGTTGAGAGTGAAGCCAGCCATGATCGCATTGAAGTTGCAACTGCAGTGGATGCTGAGGAACCTGTTCCTGCTGTTCAGACAGCAGCTGCTGAGGTTCAAGCCACTACAATTGTTCAGTTTAACAGTAAACCAACAGAAGAAGTGGCAGCAATCAGGATTCAGAAAGCTTTCCGGGGATACTTGGCAAGAAGAGCATTGCGCGCATTAAGGGGGCTGGTGAGGCTGAGATCGCTAATGGAAGGACCAGTGGTGAAACGTCAAGCCATTAGTACCCTTCGTTCTATGCAGACTTTTGCTCATTTGCAAACTCAGATTCGTTCTAGGAGGCTCAGGATGTTAGAAGAGAATCAAGCTCTACAGAAACAGCTCTTACAGAAGCACGCGAAAGAGCTAGAGAGCATGCGGATTGAGGAGGAATGGGATGATAGTGTACAATCAAAAGAACAAGTTGAAGCCAAGTTACTGAGCAAGTATGAGGCTGCTATGAGAAGAGAAAGAGCAATGGCTTATTCATTCTCTCATCAGCAAAACTGGAAGAATGCATCAAGATCTATAAACCCAATGTTCATGGATCCAACCAATCCAGCCTGGGGTTGGAGTTGGTTGGAACGATGGACGGCAGCCCGGCCCTGGGAGAGCCATAGCCTGATGGAGAAAGAGAAGAATGACAATAAATCTATAAGAAGTTCTAGCCGTGGCATTACCAGTGCTGAAATCAGCAAATCATTTGCTAAGTTTCAGCTCAATTCTGAGAAGCATTCTCCAACAGCCAGCCAAAATCCAGGCTCACCCAACTTTGAGACAAATTCCCTATCCCAATCAAATCCCCCCAAGCCACCTTCTCCAGCAGTTGCCAAGAAAGTGAAGAAAGTGAGTCCAAAGGACATCTTGGCTATAGATGATGACACCAAAAGCATGGTGAGTGTGCAGTCAGAGCGGCCGCTGCGGAGGCACTCCATTGGTGGATCAACAGTGGGAGATGATGAAAGCCTTGCAAGCTCTCCAGCAATTCCAAGTTACATGGTGCCAACTAAATCTGCCAAAGCCAAGTCCAGGATGCAAAGTCCATTAGCTGCAGAAAATAATGGGACCCCAGATAATAAAGGGTCCTCTGGGGCTGCAAAGAAACGTCTTTCTTTCCCAGCTTCACCTGCTAGGCCAAGGAGGCATTCAGGTCCACCAAAGGTAGAAAGCAGCTTCAATGCTGAAATCACTGTGGGAAATGGTGTGGCTGGTTGA 1431 0.464 MGRKGSWFSTVKKALSPEPKEKNDQKTSRSKKKWFGKQKLQTSESPSETDKAPPLPPPEIILTYVESEASHDRIEVATAVDAEEPVPAVQTAAAEVQATTIVQFNSKPTEEVAAIRIQKAFRGYLARRALRALRGLVRLRSLMEGPVVKRQAISTLRSMQTFAHLQTQIRSRRLRMLEENQALQKQLLQKHAKELESMRIEEEWDDSVQSKEQVEAKLLSKYEAAMRRERAMAYSFSHQQNWKNASRSINPMFMDPTNPAWGWSWLERWTAARPWESHSLMEKEKNDNKSIRSSSRGITSAEISKSFAKFQLNSEKHSPTASQNPGSPNFETNSLSQSNPPKPPSPAVAKKVKKVSPKDILAIDDDTKSMVSVQSERPLRRHSIGGSTVGDDESLASSPAIPSYMVPTKSAKAKSRMQSPLAAENNGTPDNKGSSGAAKKRLSFPASPARPRRHSGPPKVESSFNAEITVGNGVAG 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03306 476 PANTHER IQ-DOMAIN 5-RELATED 1 457 - -
Pumo3g03306 476 MobiDBLite consensus disorder prediction 1 58 - -
Pumo3g03306 476 MobiDBLite consensus disorder prediction 15 31 - -
Pumo3g03306 476 ProSiteProfiles IQ motif profile. 110 138 IPR000048 GO:0005515
Pumo3g03306 476 MobiDBLite consensus disorder prediction 412 433 - -
Pumo3g03306 476 MobiDBLite consensus disorder prediction 312 476 - -
Pumo3g03306 476 Gene3D iswi atpase 107 134 - -
Pumo3g03306 476 MobiDBLite consensus disorder prediction 312 338 - -
Pumo3g03306 476 Pfam IQ calmodulin-binding motif 113 131 IPR000048 GO:0005515
Pumo3g03306 476 SMART iq_5 109 131 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03306 Pumo-Chr3 60773876 60777071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03306 1 475 IQD Protein Family AT5G03040 50.928 3.24e-140 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03306 - - gmx:100799058 764.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03306 3 60773876 60777071 Pumo3g03306 3 60773876 60777071 ECH
Pumo5g03024 5 78292673 78297354 Pumo3g03306 3 60773876 60777071 PCT