Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03297 ATGGGGCATAGACATTTATATAGCTCGTCTCCAATGTTTGAGGGTGAACCTGACCAGAACTGGAATGATATGCATACCGATCAACAATATGTGAACCTTGGTAGGAGTACCACTTCAGACAATGGTTCTTTTATTTATCCTTTGGAAAATATGTCCATAGATAGCATTTCTTTTCCATCTCATTGGAACACTGCGCCAAGGTCAAACGGATATGCATCCACAAGTCTCAACATTGAAGCACCCCCTCATCAAACAGATGTATCAGGCCCATCTCATGATCATTTTCTGCATTCATCAAGTGCTGGAATGTTTTATGCAGTGCCTGAAAATTATGTACACCAGCCTTCTAATTCCAATTATGACAGACAAGCGTTTTCTGTTGCTGATGGAGGTTTTATTGATCTTACAATGGGAAATGGACGAGGGCCTCACAAGCGGAAGAGCCCTGGAGTTCCTCCGATCTGTGAGAGAGGCAGTACAAGCAGATATTTTAATGCAGCAAATGCAGCTGATCTTCCTACATCTTCAGAATTGCGGCCAGAGAAGCCCAATATGGATTCTCTATACATGCCTTGGGATCATGTTAATATGACACCCACATTTAGAGGCAGAGGCCTTTCTATACAGGATGAGGGTCCTTTAAGGAATGTGAGGAGCCGTTCTGCACTTGATTTGGAATCCAACCTGGCTAGGACCCATTTATCGAATACTCATTCACACAACTCATACTCTACTGGTCCACCAATTGACCATTCTAGCATGGTCGATCTTTCAACTCAAACTTCTGGCACTTTGACAAGGGATTGGAGCCAAATGAGTATATGTCCTCCTCATGGAAGGGTGTCATCATCAGATGCAAATGCTTTTAATAACGATGCAAGTCATTTCCTTATTGGAAGTGGTTCTAGTAATGCTCCTGTAGATGTTGGAGGTTTTCATAATGAATTTGGAACTAGCAGAAATCCTACTGCTCCTCAAAGTTTTCATAATAATCTGACTCAAACTGCAAGAGGAGTTCGCAGTAACTACTCTCAAAGGTCCACTCCAACTTTCAGGGCTTCTTCAAGCTTGCGCTTGGGTCGTGTGGCACCTTCTGATGATGGATTGCATATGGTGGCTGAAAGTTACTCTTCTAGACATCCAAGGCCATTGACCACCATTGGCTGGCAGAACAATGATAGAAATGGAAGATCAAGAATACCTAGCGATAGATATCGATCATTGGCTGATGAGGGTTTCATGATTGTTGATCGCACTTCAATGTATGGATCTAGGAATATGCTTGATCAGCATAGAGACATGAGGATGGACATAGACAACATGAGTTATGAGGAACTACTTGCACTTGGAGAGAGAATTGGCCATGTGAGCACAGGATTGTCTGAGGATTTGATTTCCAAGTATTTGACAGAAACAATATACTGTTCATCTGAGCAAAGTCAAGAAGAAGAAAGTTGTGCAATCTGTCTGGAAGAATACAAGAACATGGACGATGTTGGGACGCTGAAAGCTTGTGGACATGACTACCATGTGAGTTGCGTTAGAAAGTGGTTGTCTATGAAGAAAGTATGTCCTATCTGCAAAGCTTCTGCTTTGCCTGAGGATACGAAGGATAAATAA 1620 0.4228 MGHRHLYSSSPMFEGEPDQNWNDMHTDQQYVNLGRSTTSDNGSFIYPLENMSIDSISFPSHWNTAPRSNGYASTSLNIEAPPHQTDVSGPSHDHFLHSSSAGMFYAVPENYVHQPSNSNYDRQAFSVADGGFIDLTMGNGRGPHKRKSPGVPPICERGSTSRYFNAANAADLPTSSELRPEKPNMDSLYMPWDHVNMTPTFRGRGLSIQDEGPLRNVRSRSALDLESNLARTHLSNTHSHNSYSTGPPIDHSSMVDLSTQTSGTLTRDWSQMSICPPHGRVSSSDANAFNNDASHFLIGSGSSNAPVDVGGFHNEFGTSRNPTAPQSFHNNLTQTARGVRSNYSQRSTPTFRASSSLRLGRVAPSDDGLHMVAESYSSRHPRPLTTIGWQNNDRNGRSRIPSDRYRSLADEGFMIVDRTSMYGSRNMLDQHRDMRMDIDNMSYEELLALGERIGHVSTGLSEDLISKYLTETIYCSSEQSQEEESCAICLEEYKNMDDVGTLKACGHDYHVSCVRKWLSMKKVCPICKASALPEDTKDK 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03297 539 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 451 532 IPR013083 -
Pumo3g03297 539 MobiDBLite consensus disorder prediction 383 402 - -
Pumo3g03297 539 ProSiteProfiles Zinc finger RING-type profile. 486 528 IPR001841 -
Pumo3g03297 539 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 451 532 - -
Pumo3g03297 539 Pfam Ring finger domain 485 528 IPR001841 -
Pumo3g03297 539 CDD RING-H2_RNF24-like 486 531 - -
Pumo3g03297 539 SMART ring_2 486 527 IPR001841 -
Pumo3g03297 539 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 118 532 IPR045191 GO:0061630
Pumo3g03297 539 SUPERFAMILY RING/U-box 475 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03297 Pumo-Chr3 60671812 60680213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03297 1 538 C3H Transcription Factor Family AT2G37150 41.367 5.32e-110 337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03297 3 60671812 60680213 Pumo3g03297 3 60671812 60680213 ECH
Pumo5g03034 5 78388629 78396351 Pumo3g03297 3 60671812 60680213 PCT