Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03296 ATGAGCGTCATCGACATTCTAACCCGAGTCGATTCCATTTGCAAGAAGTACGACAAGTACGACGTCGAAAAGCACCGCGATGCCAATGTCTCCGGCGACGATGCCTTTGCCAGACTCTACGCCTCCGTCGACGCCGACATCGAGGCCTTGCTTCAGAAAGCAGAAACTGCTTCCAAGGAGAAAGGTAAGGCGTCTGCTGTAGCGATCAATGCGGAGATTCGTCGTACTAAGGCTCTGTTGCTGGAGGAGGTTCCCAAGTTGCAGAGATTGGCTGTGAAAAAGGTAAAGGGGCTCTCATCACAAGAATTTGCTGCCCGTAATGATTTGGTTCTTGCATTGCCAGATAGAATCCAAGCTATCCCAGATGGGACTCCTCCTGTGCCAAAACAAACTGGAGGCTGGGCAGCTTCTGCCTCGCGCCCTGAAATTAAGTTTGATTCAGATGGGCGATTTGATGATGAATACTTCCAACAATCTGAGCAATCAAGTCAATTTAGGCAGGAATATGAAATGCGTAGAATGAAACAGGATCAAGGTTTGGATATGATTGCTGACGGATTGGATACATTGAAAAACATGGCACATGATATGAATGAGGAACTGGATAGACAAGTTCCACTGATGGATGAGATTGACACTAAGGTGGACAAGGCATCCTCTGACCTTAAGAATACAAATGTTAGACTTAAAGACACAGTGAACCAGCTTCGGTCCAGTCGAAACTTCTGTATCGATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCCTACTTATACAACGTATTAAAGAAATGA 798 0.4511 MSVIDILTRVDSICKKYDKYDVEKHRDANVSGDDAFARLYASVDADIEALLQKAETASKEKGKASAVAINAEIRRTKALLLEEVPKLQRLAVKKVKGLSSQEFAARNDLVLALPDRIQAIPDGTPPVPKQTGGWAASASRPEIKFDSDGRFDDEYFQQSEQSSQFRQEYEMRRMKQDQGLDMIADGLDTLKNMAHDMNEELDRQVPLMDEIDTKVDKASSDLKNTNVRLKDTVNQLRSSRNFCIDIVLLIIILGIAAYLYNVLKK 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03296 265 Pfam SNARE domain 207 256 IPR000727 -
Pumo3g03296 265 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Pumo3g03296 265 PANTHER SYNTAXIN 45 252 IPR045242 -
Pumo3g03296 265 CDD SNARE_Qc 175 230 - -
Pumo3g03296 265 SMART tSNARE_6 165 232 IPR000727 -
Pumo3g03296 265 SUPERFAMILY SNARE fusion complex 165 230 - -
Pumo3g03296 265 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484|GO:0006886|GO:0016020
Pumo3g03296 265 FunFam Putative syntaxin-71-like 170 231 - -
Pumo3g03296 265 Gene3D - 170 231 - -
Pumo3g03296 265 Coils Coil 40 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03296 Pumo-Chr3 60631461 60635465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03296 1 264 SNARE and Associated Proteins AT3G09740 78.571 6.76e-157 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03296 K08506 - gmx:100819272 479.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03296 3 60631461 60635465 Pumo3g03296 3 60631461 60635465 ECH