Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03295 ATGCAAATGATGCCCGGTGACCCCTTTTCCCTATCCACTTCCATCGGAGGCTTCACTCAAGATCAGCAAAACACAAACCCTAACCCTAAACCTAATCCCCCTCCCAAGAAGAAGAGAAACCTTCCAGGCACACCAGATCCAGATGCCGAGGTCATTGCTCTCTCCCCGAAGACCCTCATGGCCACGAACCGATTCATATGCGAAATATGCAACAAAGGGTTCCAGAGAGACCAAAACCTTCAGCTTCACCGAAGGGGTCACAACCTTCCGTGGAAGCTAAGACAAAGGTCCAACAAAGAGGTAAGGAAGAAGGTTTATATCTGCCCCGAACAATCCTGCGTCCACCACGACCCGGCAAGAGCACTCGGCGACCTCACTGGCATCAAAAAGCACTTCAGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGTGAAAAGTGCTCCAAGAAATACGCAGTCCAATCAGATTGGAAAGCACACACCAAAACCTGTGGCACTAGAGAATACAAATGCGACTGTGGCACCCTCTTCTCCAGGAAGGACAGCTTCATTACTCATAGAGCGTTTTGCGATGCCTTGGCTGAAGAGAGTGCGAGGCTCACCTCAGTCACCACAACAAATCTAAATTTCAAGAGTGAAGATGGTGTTAACAATGTGATGAACTCGCAGCATGGTTTGGGAGGACATGGACTAATTGCAACTCAGGGTCTTCAAAATGTTTCTGGCATTCCACAATTTGGTCCACATGGTTTTCGTTTGGATTTCAATGGAATGGAACAACCAAGGCCAAGCTTGTCACTGTGGTTGAACCAGGGGAATCCCCAGATGAATAATAATAATAATAATAATATTAATGGCAGCAACAGTGTTTCCGATGTGGGACCCAATTACATGTCGTCATCAGGTTTGCCTGAGATTGTGCAAATGGCTCAGGCTAATGCTTTAATGGGTTCTTCCTCGATGGTGTCCAATTTTGGAATTCCTGCGGGTTCTAATTCAACCAGTGCAAATCTTTCACTAGGGAAAAGAGGGGAAGCAGGTGGAACTGTAGTGGACTTGGCGTCTATTTATAATTCTGAGGGTCAAAACAAGAATTCAAAGCCTGCTTCACCCATGTCAGCAACTGCGCTTCTTCAGAAAGCAGCGCAAATGGGTTCCACAAGAAGCACCAACCCTTCCATTTTCAGTGGTAGTTTTGGAGTGATCAACTCACCTTCCTCACAAACTACCAGTCTCAATAATAACAACAACAACGGTGGTGCAGCCATGATGCTGGGAAGTAACACTGCTACTACTACTGCAAATGACTTTAGCTCATTGACGCATTCATCAAACAGTTTTGACCAACTCGTGATGCAAACCAATGGGCAGTTACAAAGTGAGCCTGTGAAGTTGAAGCTTCATTCAAAAGCCGTGGAGCATAACTTAACAAGGGATTTTCTCGGAGTCACTGGAGGAGGAGGTGGTGGTGGTGGACCTCAGTTTCTTCCCCAAGAACTTGCAAAGTTTGCTTCCATAGGCTCGCCAATGGGGTTGAGCCAATTCACAAGTAACCAATGA 1557 0.465 MQMMPGDPFSLSTSIGGFTQDQQNTNPNPKPNPPPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEQSCVHHDPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTSVTTTNLNFKSEDGVNNVMNSQHGLGGHGLIATQGLQNVSGIPQFGPHGFRLDFNGMEQPRPSLSLWLNQGNPQMNNNNNNNINGSNSVSDVGPNYMSSSGLPEIVQMAQANALMGSSSMVSNFGIPAGSNSTSANLSLGKRGEAGGTVVDLASIYNSEGQNKNSKPASPMSATALLQKAAQMGSTRSTNPSIFSGSFGVINSPSSQTTSLNNNNNNGGAAMMLGSNTATTTANDFSSLTHSSNSFDQLVMQTNGQLQSEPVKLKLHSKAVEHNLTRDFLGVTGGGGGGGGPQFLPQELAKFASIGSPMGLSQFTSNQ 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03295 518 MobiDBLite consensus disorder prediction 1 26 - -
Pumo3g03295 518 FunFam protein indeterminate-domain 12-like 44 112 - -
Pumo3g03295 518 MobiDBLite consensus disorder prediction 1 49 - -
Pumo3g03295 518 Gene3D Classic Zinc Finger 120 198 - -
Pumo3g03295 518 Gene3D Classic Zinc Finger 43 117 - -
Pumo3g03295 518 Pfam Zinc-finger double-stranded RNA-binding 65 87 IPR022755 -
Pumo3g03295 518 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 87 IPR013087 -
Pumo3g03295 518 SUPERFAMILY beta-beta-alpha zinc fingers 64 161 IPR036236 -
Pumo3g03295 518 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Pumo3g03295 518 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 492 IPR031140 -
Pumo3g03295 518 SMART c2h2final6 65 87 IPR013087 -
Pumo3g03295 518 SMART c2h2final6 141 161 IPR013087 -
Pumo3g03295 518 SMART c2h2final6 106 136 IPR013087 -
Pumo3g03295 518 FunFam protein indeterminate-domain 5, chloroplastic-like 119 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03295 Pumo-Chr3 60613281 60616245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03295 1 258 IDZ Gene Family AT5G03150 64.311 5.02e-123 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo3g03295 zf-C2H2_jaz 7.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03295 K25870 - gmx:100801182 853.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03295 3 60613281 60616245 Pumo3g03295 3 60613281 60616245 ECH
Pumo5g03038 5 78428786 78431609 Pumo3g03295 3 60613281 60616245 PCT