Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03292 ATGGCAACTGAAGCTGCAGACTCTTCCAAGGACAGCAATAGCCAAGGCCATGGCACCACTGAAAATAGGGCTGATATCCCAATTCAAAAGGGTCCAGCATCATCTGAAATAACTGAGGAACTCCCAAGAGAACAACATGGGACAAGGCAAAACCTTATCTTGGATATTCCTGCAATACCTCAGGAGGAAGCAAGAGAAGATTATGTGAGGATAAACATGCCTCTAACTCCACCTCCAAGAAGAGTGATTTTTTCCCCCTGTCCAAGTCCTGTTTTCCCCAGAAGCAAAGAATCCCCAGATCCCTCCTCATCAAAAAATAGATCAAATATTAAAACCTTTCTTCCCAAACTCAGTTTGAAATTTCGCAACACAAGTTCGGAGATTGAAAAGGCTGCCTTCCTAGCACTTGAAGGATCAGCAACAGTGGCACCAAAAAAGCCTTTTCTTTCAAGGACATTATCTCTTGTCACACCTAGAGGGAAGAAAACATCATCCTTACCTGTAACCCCAATTGCTCATTCAAATCCAGGGTCTGTACATGGAGGGAACATGGCTTATGCAGAAACAGCTGAGAAAGAACTGAACTTACCAATTCATCGGTCCCGTTCAGTACCTGTGCTTAACAAAGAAGGTAACTCACCTGTACGTGGCATGTTTCGTATAGTTCCGACCACACTACGATTGGATGAGAAAATTGCCACAACAACACCTATGACATCTCCAATTCATGATACTGTTAAAAATGAGGATGGTGGTGAAGATATTCCCGAAGAAGAAGCTGTTTGTAGAATTTGTATGGTTGAACTCGGAGAAGGTGCTGATACTTTCAAATTGGAGTGTAGCTGCAAAGGTGAGCTTTCATTGGCACACAAAGAATGTGCAGTAAAATGGTTTACCATTAAAGGTAATAGAACATGCGATGTGTGCAAGCAAGAAGTTCAGAATCTACCTGTCACTCTTTTACGAGTTCAAAATGGTCAGGCACATAACATGCTAGGGGCTGATGCTTCTCAATACAGGGTTTGGCAGGATGCTCCCATTCTTGTTGTTATCAACATGCTGGCTTACTTTTGTTTTCTTGAGCAGCTTCTTGTGTCTAATATGGGATCTGGTGCTATTGCCATGTCTCTCCCATTTTCATGTATATTGGGTCTTCTTGCAAGCATGACAGCTACAACAATGGTGAGGAGAAATCATGTTTGGATTTATGCAACTGTTCAGTTTTGTCTGGTGGTTCTCGCTGGACATCTTTTCTTCTCATTGGTTCATATGCAAGCTGTTCTAGCTATCCTACTAGCTACATTTACTGGGTTTGGAGTTGTAATGTGTGGAGTTTCTATTCTTATGGAGATTTTGAAGTGGAGGAGAAGATCCCTTGCTCAATCAAATCAACAGCAAGGTTCCCAAGAGGCAGTACCATTACCTGATCAATCATCTACAGTTGCTCATCAAGCTCAGATTGGTTCTGAACAAACTGAAAGTAATTTGGGAGAGTCTCCTGCACAGAGGAGTTGA 1515 0.4231 MATEAADSSKDSNSQGHGTTENRADIPIQKGPASSEITEELPREQHGTRQNLILDIPAIPQEEAREDYVRINMPLTPPPRRVIFSPCPSPVFPRSKESPDPSSSKNRSNIKTFLPKLSLKFRNTSSEIEKAAFLALEGSATVAPKKPFLSRTLSLVTPRGKKTSSLPVTPIAHSNPGSVHGGNMAYAETAEKELNLPIHRSRSVPVLNKEGNSPVRGMFRIVPTTLRLDEKIATTTPMTSPIHDTVKNEDGGEDIPEEEAVCRICMVELGEGADTFKLECSCKGELSLAHKECAVKWFTIKGNRTCDVCKQEVQNLPVTLLRVQNGQAHNMLGADASQYRVWQDAPILVVINMLAYFCFLEQLLVSNMGSGAIAMSLPFSCILGLLASMTATTMVRRNHVWIYATVQFCLVVLAGHLFFSLVHMQAVLAILLATFTGFGVVMCGVSILMEILKWRRRSLAQSNQQQGSQEAVPLPDQSSTVAHQAQIGSEQTESNLGESPAQRS 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03292 504 MobiDBLite consensus disorder prediction 80 109 - -
Pumo3g03292 504 MobiDBLite consensus disorder prediction 464 504 - -
Pumo3g03292 504 SUPERFAMILY RING/U-box 258 313 - -
Pumo3g03292 504 MobiDBLite consensus disorder prediction 1 58 - -
Pumo3g03292 504 ProSiteProfiles Zinc finger RING-CH-type profile. 254 316 IPR011016 GO:0008270
Pumo3g03292 504 MobiDBLite consensus disorder prediction 1 22 - -
Pumo3g03292 504 Pfam RING-variant domain 262 309 IPR011016 GO:0008270
Pumo3g03292 504 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 317 IPR013083 -
Pumo3g03292 504 CDD RING_CH-C4HC3_MARCH 262 310 - -
Pumo3g03292 504 SMART ringv_2 261 310 IPR011016 GO:0008270
Pumo3g03292 504 MobiDBLite consensus disorder prediction 159 180 - -
Pumo3g03292 504 PANTHER OS02G0165000 PROTEIN 8 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03292 Pumo-Chr3 60563653 60570512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03292 256 334 C3H Transcription Factor Family AT2G37950 37.500 1.05e-11 62.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03292 3 60563653 60570512 Pumo3g03292 3 60563653 60570512 ECH