Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03290 ATGCCTCCGCCGGAAGTCACGGCGAACCGATTCGTGTATCCTCCGGCCGCCACGCCGTATCACAACTACCCCGGGTACTACCCGCCGCCGACGACCATGCCGGCGCCGTTGCCGGCGCCGTACGACCACCACCACCGTCCGGCGGTGGACCCGATGTGGGGGCGGTATCCGGCGGCGGCGGCGGCACCGGCGCCGTATGTGGAGCACCAGAAAGCGGTTACGATAAAGAACGATGTCAACATCAAGAAGGAGACGCTTAGGATTGAGCCTGATGACGACAATCCTGGCCGTTTCCTCGTGTCGTTTACGTTTGATGCCACCGTTTCGGGGAGCATCACCATACTTTTCTTTGCAAAAGAAGGGGAAGGTTGCACCCTAACCCCGACGAAGGAAAACGTTCTTCCACCTGTAATTGTAAATTTCCAGCAAGGTCTTGGCCAGAAGTTTAAACAGCCAGCTGGAACTGGTATTGATTTTTCAATATTTGAGGAGTCTGAGTTGTTGAATATAGGGGACATGGATGTCTATCCTGTTGCAATTAAAGCAGACGCATCCTCTGGCGACCATGATGAATCAAAATCAAATGAAACTCCATCATCTGGTAACTCAAACTCTCAGATAACTCAAGCAGTGTTTGGGAAGGAGAAAGGAGAGTTCCAGGTGAAGGTTGTTAAGCAGATCTTATGGGTAAATGGAATGAGGTATGAACTGCAGGAGATATATGGTATTGGAAATTCAGTGGAGAGTGATGTGGATGGGAATGACCCCGGAAAAGAGTGCGTTATATGCTTGTCGGAGCCTCGGGACACAACTGTCCTTCCATGTCGCCACATGTGTATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAGACAAATAGATGTCCAATTTGCAGACAACCAGTTGAGAGGCTTTTGGAGATCAAAGTTGGGCCTGAGCCTGAGCCTGAGGAGTGA 957 0.511 MPPPEVTANRFVYPPAATPYHNYPGYYPPPTTMPAPLPAPYDHHHRPAVDPMWGRYPAAAAAPAPYVEHQKAVTIKNDVNIKKETLRIEPDDDNPGRFLVSFTFDATVSGSITILFFAKEGEGCTLTPTKENVLPPVIVNFQQGLGQKFKQPAGTGIDFSIFEESELLNIGDMDVYPVAIKADASSGDHDESKSNETPSSGNSNSQITQAVFGKEKGEFQVKVVKQILWVNGMRYELQEIYGIGNSVESDVDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGPEPEPEE 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03290 318 MobiDBLite consensus disorder prediction 184 205 - -
Pumo3g03290 318 Pfam Zinc finger, C3HC4 type (RING finger) 258 304 - -
Pumo3g03290 318 SUPERFAMILY RING/U-box 259 305 - -
Pumo3g03290 318 PANTHER MAHOGUNIN 22 309 IPR045194 GO:0061630
Pumo3g03290 318 ProSiteProfiles Zinc finger RING-type profile. 260 299 IPR001841 -
Pumo3g03290 318 SMART ring_2 260 298 IPR001841 -
Pumo3g03290 318 FunFam probable E3 ubiquitin-protein ligase LOG2 244 309 - -
Pumo3g03290 318 CDD mRING-HC-C3HC5_MGRN1-like 258 299 IPR045195 -
Pumo3g03290 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 309 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03290 Pumo-Chr3 60538746 60543359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03290 54 279 C3H Transcription Factor Family AT3G09770 66.383 5.07e-106 311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03290 3 60538746 60543359 Pumo3g03290 3 60538746 60543359 ECH
Pumo5g03045 5 78478480 78482483 Pumo3g03290 3 60538746 60543359 PCT