Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03289 ATGCCATTACCGTGTATTCTCTGTTTACTGAAACATGGTCTTTCTCATTTTCTCCACACGCTCTTCCTCTCCAAAACCTTCTTATATTACCCCGAAACACCAAAATCCAAGGGAGTGTTACTCTTATCTCAAGACATGAAGATTTCTTGTTTCGCTTGTTTCTCGCCATCAACCATTGAACAAAACAACGACAACAACAACGACTACCCAGAGGGAGAGATTAACGATGGGAGCTTTCGTTTGTTCACTTGCAACCAATTGAAATTAGCCACAAGGAATTTTCATTCCTCGGAGAAGGTTGGAGAAGGTGGCTTTGGATCTGTCTATAAGGGGAAGCTTGTGGATGGTTCTTCTGTGGCGGTGAAAGTGCTCTCGGTTGAGGTGGAATCCATGCGAGGAGAGAGGGAATTTGTGGCGGAATTGGCTACACTTGCAAACATCAAGCACCAAAATCTTGTAAGCCTAAAAGGGTGTTGTGTGGAAGGAGTTCACAGATATTTGGTCTATGATTATATGGAGAACAATAGCCTCTACAACACTTTCTTAGGTTCGGAAGAGAGAAGGATGAGATTCAGTTGGGAAATAAGGAGGGACATATCCATAGGTGTGGCTCGGGGACTTGACTTTCTCCATGAGGAGATTAAGCCTCATATCGTACATAGAGACATCAAAGCCAAAAATATACTTCTTGATAGTAATTTCACACCAAAGGTTTCAGATTTTGGTTTGGCAAAATTGCTCAGAGACGAAACTTCTTACATCAGCACTCGTGTTGCAGGGACATTGGGTTATCTAGCTCCAGAATATGCCAATTCTGGACAGGTTTCACGAAAATCAGATGTTTACAGTTTTGGAGTCTTGCTTTTACAAATTGTGAGTGGCCTAGCAGTGGTGGATGCCTATCAAGACATTGAAAGTTTCATAGTGGAGAAGGCGTGGGCAGCGTATCAAGCTAACGATTTATTAAAACTGGTGGATCCGATGCTTAATATGAACTTTCCCGAGGAAGAGGCCCTGAAATTCCTCAAGGTGGGGCTGCTATGCGTGCAAGAAACCGCCAAGCTTCGGCCACGAATGTCAGAGGTTGTGGAGAAGTTGACCAAGGACATTGACATGGAAGATGTTCACATTTCGAAACCAGGGTTCGTTGCTGATCTCAGGAACATTAGAATCAAGACACAAAACCTAAACTCGTCCCAGGAATCAAGTTCTTCTGGAGCAACCTTTACAAGCTCCATTTGGAGTTCGGCCAATCTTGCTCGTTAG 1266 0.436 MPLPCILCLLKHGLSHFLHTLFLSKTFLYYPETPKSKGVLLLSQDMKISCFACFSPSTIEQNNDNNNDYPEGEINDGSFRLFTCNQLKLATRNFHSSEKVGEGGFGSVYKGKLVDGSSVAVKVLSVEVESMRGEREFVAELATLANIKHQNLVSLKGCCVEGVHRYLVYDYMENNSLYNTFLGSEERRMRFSWEIRRDISIGVARGLDFLHEEIKPHIVHRDIKAKNILLDSNFTPKVSDFGLAKLLRDETSYISTRVAGTLGYLAPEYANSGQVSRKSDVYSFGVLLLQIVSGLAVVDAYQDIESFIVEKAWAAYQANDLLKLVDPMLNMNFPEEEALKFLKVGLLCVQETAKLRPRMSEVVEKLTKDIDMEDVHISKPGFVADLRNIRIKTQNLNSSQESSSSGATFTSSIWSSANLAR 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03289 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Pumo3g03289 421 Pfam Protein kinase domain 94 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g03289 421 FunFam Putative LRR receptor-like serine/threonine-protein kinase 172 378 - -
Pumo3g03289 421 SMART serkin_6 94 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g03289 421 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 55 404 - -
Pumo3g03289 421 ProSitePatterns Protein kinases ATP-binding region signature. 100 122 IPR017441 GO:0005524
Pumo3g03289 421 FunFam Serine/threonine-protein kinase receptor 62 171 - -
Pumo3g03289 421 CDD STKc_IRAK 100 368 - -
Pumo3g03289 421 ProSiteProfiles Protein kinase domain profile. 94 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g03289 421 SUPERFAMILY Protein kinase-like (PK-like) 78 378 IPR011009 -
Pumo3g03289 421 Gene3D Transferase(Phosphotransferase) domain 1 172 379 - -
Pumo3g03289 421 Gene3D Phosphorylase Kinase; domain 1 56 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03289 Pumo-Chr3 60527062 60529318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03289 82 409 Receptor kinase-like Gene Family AT1G53430 46.970 1.65e-91 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo3g03289 Pkinase 2.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03289 - - gmx:100813945 674.085