Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03288 ATGACACTGTTCCCAACCCAACCCAACCCAACCATGCAAATTATTCTCTCTACCCTCTCTCACTGTTCCCTCTTTCTTCTCTTCTTGCTCGTGTTCCTCTGCGGCGCGGCGCACGGGTTCGGCACAATGGGACCAATCTCTGCGTCGTTCGGAAAAGACGAGGTTTTCTGCACCATCGATGCTAGTGGAAAGCAGGACGTTATTTGCTGGGGGAGCAACGCCACGTCACCGTCGGTTTCCTCCGTCGCCAACGCCGTCCCTGCCATGTCAGCACTATCCGGCGGGGAAGGGTTTCTCTGCGGCATTTTAGCGAACACCTCGCAAGCGTTCTGCTGGGGCGCAGTGACCAAACCGAGCGCAGATCTCGTCCTCGTGCCTCCGCCGTACCGGAACACCGCCTACTGCCACATCGCCGCCGGCAAGAGCCACGTTTGCGCCGTCCGGGGATCCTACTACGCCGATCGCGATTCCGGCAACGTTGATTGCTGGGAAATAACGAAAACCGCGAACAAGACTTTATCAGCGAAACAGAGTGACTTGTTCAACGACCAATCCGTGATGAATCTGGAGGTTAAGAGGGTTGTTTCCGGCGAGGGGTTCACCTGCGGCGAGGTGAACGCCGGTGGACTAATCTGCTGGGGACCCACTTCGGGGAGTTTGGGCATTTCCAATGTCTCCGACAGTTTCGCGGTTCTTGCGGCGGGCCGGAGCGCCGTGTGCGGCGTTTTCAACGTTTCCGGCGAGTTAAAATGCTGGGGCGACCCGGCTTCGTATTCGGATCCTCCAGAAGATTGGGTTCGATTGGTGTCACTATCCGCAGGGGCTAACCATTTCTGCGGCATTAGAATGGATAACCACGAAGTTGAATGTTGGGGTGATTTGAATTCCTCGGTTGTTCCAAAAGGTAATGGCTTTATGGCTATTGCCTCTTCGGATTTCACCACGTGCGGGATCAGGGAAGATGATCTTCTTCTTGATTGTTGGTTGGTCAACGCTTCGAAGCCCGATTTTGATCCTCCTTTGGAGCTTTCGAGTCCTGGACTCTGCAGGGCTAGTTCGTGTGGGGTTGATGAGTTTGCTTTCAATGTGAGTGTGCTTAACGAGCTAGCTTTGACAAGCTTGTGTGTTAGAGAGGATTTGAGGATTTGTTCGCCTTGTGGGTCAAACTGTTCCAAAGGGTTCTTCTTGTCTAGTGAATGTACTAGCAACTCGGATAGAGTTTGCACTGCTTGTTCTCTTTGTCAGAACAGTTCTTGTTTTGGTGTTTGTGGACTTCACTCGTCAACGGGGCTGCATTTGCATTGGCATTGGCATTGGCATCATATGCGGAAATGGGTGGTTATAGTTGGGTGTCCAGTGTTGGGGGTTTTGGCTATTTTGCTTTGTGGGTGTCTTTTTATGATTAGAAAGAGGACAAAGAAGCAATCCAAGTCTTGCATCGGAAAACCGGATCAGGAGGATGATCATGTGAATGTTGCTCTTAACTCTACTCCTTCTGTTAATTCCTGTCCCGGGGCACCCCAGGTTTTCAGGCTTTCTGAGCTGAAGGATGCTACTAATGGGTTTAAGGAGTTCAACGAACTTGGGAGGGGGAGTTATGGGTTTGTGTACAAAGCAGCATTAGCTGATGGGAGAGTGGTTGCTGTCAAACGAGCAAATGCTGCCACCATAATTCACACCAATAACCGCGATTTTGAAACGGAGCTGGAAATTCTCTGCAAAATTCGCCACTTTAATGTTGTCAATTTGTTGGGGTATTGTGCGGAGATGGGGGAGAGGTTGCTTGTCTACGAGTATATGCCTCATGGAACGCTTTATGATCACCTCCATGGTGGTCTTTCTCCGCTGAATTGGAGCCTCAGGTTGAAGATAGCAATGCAGGCTGCAAAGGGGCTTGAGTACCTTCACAAGGAACTTGTGCCTCCAATTGTGCATAAGGATCTTAAAAGTTCAAACATTCTTTTGGATTCAGAGTGGGGGGCAAGGATTTCAGACTTCGGACTTCTTGCTTCGAGTGACAAGGATCTCAATGGGGACCTTGAAAGCGATGTTTACAATTTTGGGATTGTGTTGCTTGAGATTCTGAGTGGAAGAAAGGCTTATGATAGGGATTACACTCCACCCAACATGATTGATTGGGCAGTGCCTTTGATCAAACAAGGGAAGGCTGCTGCTATAATTGATAGGTACGTGGCTCTTCCAAGAAATGTTGAACCTTTGCTTAAGCTTGCTGATATAGCAGAGCTTGCTGTGAGAGAGAATCCAAGTGAACGTCCACCTATGTCAGATATAGCATCTTGGTTGGAGCAAATTGTTAAGGACGGATTGATCTTATAG 2337 0.4955 MTLFPTQPNPTMQIILSTLSHCSLFLLFLLVFLCGAAHGFGTMGPISASFGKDEVFCTIDASGKQDVICWGSNATSPSVSSVANAVPAMSALSGGEGFLCGILANTSQAFCWGAVTKPSADLVLVPPPYRNTAYCHIAAGKSHVCAVRGSYYADRDSGNVDCWEITKTANKTLSAKQSDLFNDQSVMNLEVKRVVSGEGFTCGEVNAGGLICWGPTSGSLGISNVSDSFAVLAAGRSAVCGVFNVSGELKCWGDPASYSDPPEDWVRLVSLSAGANHFCGIRMDNHEVECWGDLNSSVVPKGNGFMAIASSDFTTCGIREDDLLLDCWLVNASKPDFDPPLELSSPGLCRASSCGVDEFAFNVSVLNELALTSLCVREDLRICSPCGSNCSKGFFLSSECTSNSDRVCTACSLCQNSSCFGVCGLHSSTGLHLHWHWHWHHMRKWVVIVGCPVLGVLAILLCGCLFMIRKRTKKQSKSCIGKPDQEDDHVNVALNSTPSVNSCPGAPQVFRLSELKDATNGFKEFNELGRGSYGFVYKAALADGRVVAVKRANAATIIHTNNRDFETELEILCKIRHFNVVNLLGYCAEMGERLLVYEYMPHGTLYDHLHGGLSPLNWSLRLKIAMQAAKGLEYLHKELVPPIVHKDLKSSNILLDSEWGARISDFGLLASSDKDLNGDLESDVYNFGIVLLEILSGRKAYDRDYTPPNMIDWAVPLIKQGKAAAIIDRYVALPRNVEPLLKLADIAELAVRENPSERPPMSDIASWLEQIVKDGLIL 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03288 778 FunFam Serine/threonine-protein kinase-like protein CCR1 677 775 - -
Pumo3g03288 778 FunFam serine/threonine-protein kinase-like protein CCR1 491 599 - -
Pumo3g03288 778 Gene3D Phosphorylase Kinase; domain 1 488 599 - -
Pumo3g03288 778 Gene3D - 48 334 IPR009091 -
Pumo3g03288 778 Gene3D Transferase(Phosphotransferase) domain 1 677 775 - -
Pumo3g03288 778 Gene3D Transferase(Phosphotransferase) domain 1 600 676 - -
Pumo3g03288 778 FunFam Serine/threonine-protein kinase-like protein CCR1 600 676 - -
Pumo3g03288 778 ProSiteProfiles Protein kinase domain profile. 522 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g03288 778 Pfam Protein tyrosine and serine/threonine kinase 526 672 IPR001245 GO:0004672|GO:0006468
Pumo3g03288 778 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 24 772 - -
Pumo3g03288 778 SUPERFAMILY RCC1/BLIP-II 65 322 IPR009091 -
Pumo3g03288 778 ProSitePatterns Protein kinases ATP-binding region signature. 528 550 IPR017441 GO:0005524
Pumo3g03288 778 ProSitePatterns Serine/Threonine protein kinases active-site signature. 643 655 IPR008271 GO:0004672|GO:0006468
Pumo3g03288 778 SUPERFAMILY Protein kinase-like (PK-like) 498 769 IPR011009 -
Pumo3g03288 778 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 353 408 IPR001368 GO:0005515
Pumo3g03288 778 SMART serkin_6 522 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03288 Pumo-Chr3 60480881 60484118 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03288 58 769 Receptor kinase-like Gene Family AT5G47850 27.728 2.91e-71 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Pumo3g03288 PK_Tyr_Ser-Thr 2.3e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03288 - - gmx:100802259 1394.02