Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03281 ATGATTACGTTCATGGACTCAAAGGAGAAATCAAAGGAGGTGGAGAAGTGTTTGGATCCTCAGCTATGGCATGCGTGTGCAGGTGGCATGGTGCAGATGCCAGCAGTGAACACTAAGGTTTATTACTTCCCTCAGGGTCATGCTGAGCATGCATGTGGACCAGTTAGCTTCAGGACTAGTCCTAAGGTTCCACCTTTGGTTCCATGCAGAGTGGCTGCTATCAAATACATGGCTGATCCTGAGACCGATGAGGTCTATGCCAAACTCAGGCTTGTTCCTCTGAATGCCAATAGTGATGCTGATTATGACCGTGATGCTGTTGTTGTTGTTGGGGCTGAAACTCAGGACAAGCCTGCTTCATTTGCAAAAACCTTGACCCAATCTGATGCCAACAATGGTGGGGGGTTTTCTGTTCCTAGGTACTGTGCTGAGACAATTTTCCCTCGCTTGGACTACTCGGCTGACCCTCCTGTTCAGAACATCCTTGCCAAGGATGTTCATGGTGAGACATGGAAATTCAGACACATCTATAGGGGCACGCCACGGCGGCATCTCTTGACTACCGGCTGGAGTACTTTTGTGAATCACAAGAAGCTTGTTGCTGGGGACTCAATTGTGTTTTTGAGGGCAGAAAATGGGGATCTGTGTGTCGGGATTCGGCGGGCGAAGAAGGGGATTGGTGGGGGGCCTGAGGCTCCCTCAGGGTGGAATCCTGCAGGAGGAAATTGTCCTTTGTCCTATGGTGGATTTTCGCCCTTTTTGAGGGAGGAGGATCATAGAATCCTGAGAAATGGTAGCAGCAATGGGCTGAACCCCAGTGTGAGTATGATGGGAAGGGGAAAAGTGAGGCCGGAAGCAGTTGCTGAAGCTGCAAATCTTGCAGCCAATAAGCAACCCTTTGAGGTTGTTTACTACCCTCGGGCAAGTACTCCGGAGTTTTGTGTGAAGGCCTCACTAGTTGAAGCAGCACTGCAGATTAGGTGGTGTTCTGGAATAAGGTTCAAGATGGCCTTTGAAACGGAAGATTCCTCACGGATAAGTTGGTTTATGGGAACCATATCTTCAGTTCAGGTTGCTGATCCCCTTAACTGGCCTAACTCACCTTGGAGGCTTCTCCAGGTTACATGGGATGAACCAGATTTACTTCAAAATGTGAGAAGGGTGAGCCCGTGGCTGGTTGAATTGGTGTCAAACATGCCTGCCATTCATCTTTCCCCTTTCTCACCACCACCACGGAAGAAATTGAGATTCCCTCAATACCCAGATTTCCCCCTTGATGGCCAGATTCCTTTGCCAACATTTCCCGGCAACCTTCTAGGTCCCAGCAACACCAACCCGTTTGGTTGTCTACCCGAAAGTACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCACTATGGTATATCCTTATCGGATCTCCACCTCAGTAAACTTCAGTCAGGTCTATTTCCGGCTGGTTTCCCGCCTCTTGATCACACTGCTACACCAATGAGGTTCTTGAATAACGTAACATTGCAGAAGCCCAGCATGAGTGAGAATGTCTCTTGCGTACTATCTATGGCAAATTCTACTCAGTCTTCAAAGAAATTGGATGATGGGAAGACACCCCAGCTTGTGCTTTTTGGCCAAAAAATTCTCACAGAGCAGCAGATCTCTCTGAGCAGCTCTGGTGATACACTCTCCCCGGTTCTTACCAGAAATTGTTCGTCGGATGGAAATGCCGATAAAGTGGCTAATTTTTCCGACGGTTCTGAATCGGCTCTTCATCAGCAAGGCCTACACGGACGCTCCTCTTGTGAGAGGTTCCAGTGGTATAGGGATAACCACCAAGAAACCGAGGCCGGTTTGGAGACCGGTCACTGTAAAGTTTTTATGGAGTCCGAAGATGTAGGTCGGACTATGGACCTCTCGTTGCTTCAGGTGCTCTACCGCGACACAACTGGGGCAGTCAAACACATTGGTGATGAACCATTCAGTGACTTCACAAGAACAGCAAGGAGGTTGACTATTCTAATGGACTCTGGCAGCAACAATGTAGGAGTGTAG 2046 0.4897 MITFMDSKEKSKEVEKCLDPQLWHACAGGMVQMPAVNTKVYYFPQGHAEHACGPVSFRTSPKVPPLVPCRVAAIKYMADPETDEVYAKLRLVPLNANSDADYDRDAVVVVGAETQDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKKGIGGGPEAPSGWNPAGGNCPLSYGGFSPFLREEDHRILRNGSSNGLNPSVSMMGRGKVRPEAVAEAANLAANKQPFEVVYYPRASTPEFCVKASLVEAALQIRWCSGIRFKMAFETEDSSRISWFMGTISSVQVADPLNWPNSPWRLLQVTWDEPDLLQNVRRVSPWLVELVSNMPAIHLSPFSPPPRKKLRFPQYPDFPLDGQIPLPTFPGNLLGPSNTNPFGCLPESTPAGMQGARHAHYGISLSDLHLSKLQSGLFPAGFPPLDHTATPMRFLNNVTLQKPSMSENVSCVLSMANSTQSSKKLDDGKTPQLVLFGQKILTEQQISLSSSGDTLSPVLTRNCSSDGNADKVANFSDGSESALHQQGLHGRSSCERFQWYRDNHQETEAGLETGHCKVFMESEDVGRTMDLSLLQVLYRDTTGAVKHIGDEPFSDFTRTARRLTILMDSGSNNVGV 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03281 681 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
Pumo3g03281 681 FunFam Auxin response factor 328 401 - -
Pumo3g03281 681 Gene3D - 119 223 IPR015300 -
Pumo3g03281 681 Pfam Auxin response factor 290 373 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pumo3g03281 681 Pfam B3 DNA binding domain 121 222 IPR003340 GO:0003677
Pumo3g03281 681 SMART B3_2 121 223 IPR003340 GO:0003677
Pumo3g03281 681 FunFam Auxin response factor 119 223 - -
Pumo3g03281 681 SUPERFAMILY DNA-binding pseudobarrel domain 114 222 IPR015300 -
Pumo3g03281 681 CDD B3_DNA 120 221 IPR003340 GO:0003677
Pumo3g03281 681 Gene3D - 327 401 - -
Pumo3g03281 681 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 673 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03281 Pumo-Chr3 60403624 60406849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03281 14 681 B3 DNA Binding Superfamily AT4G30080 55.635 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pumo3g03281 B3 3.6e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03281 - - gmx:100796522 1213.36