Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03277 ATGGTTTCTGATAGATCAAGATCTGTGAGATTTCAAGATGAACTTGAGACAAATAAGTTAATGGACAACAAAGAAAGTCACTTGTCAATGGTGTCCTTTGATGAAGTGAGTGAGAGTGATAAACAGAAGGGTGGAAAGGATGCAATAGGCAAGTCCTCTGATGGAAGAGAACTTTCAAGGGTCTTTTCTGAGGATTATGATGCAGCACAGATTTTGATATTGGATCCTAGGGGACCTAGAGTAAATACATGGAACAAAATTTTCTTAGCAGCATGTTTGCTTTCATTATTTGTGGATCCCCTATTCTTTTACTTACCAGTGGCTAGGAAAGACAAGTGCATTGATATGTCAACTGGTCTTGAAGTGTTCCTCACCATAATCCGGTCATTGATTGATGCATTTTACATTATTCAGATTTATTTTCGGTTTCAAACTGCTTATATTGCTCCTTCCTCTCGTGTTTCTGGTAGAGGAGAGCTTATCCTAGACTCTTCAAAAATTGCATCAAAGTACATGCGAAGAGACTTCTGGCTTGATCTAGTGGCTGCTCAACCACTTCCACAGGTATTGATTTGGGCTGTAATTCCAAATCTAAAAGGGTCTCAAATGATTGCTTCAAGGCATGTTTTACGCCTTGTTTCCATTTTCCAGTACCTCTTGAGGTTGTATCTTATTTATCCTCTATCATCTGAAATCGTCAAGGCAAATGGGGTAATGATGGAAAAAGCATGGGCTGGGGCAGCATATAATCTGATGCTCTATATGCTGGCTAGTCATGTTTTAGGATCCACTTGGTATCTGTTATCAATTGAACGCCAGAATGAATGTTGGAAGAAAGCTTGTACACTGCAGTACCCACAATGCCAATATCATTATCTTGATTGCCAAAGCATGAATGACCCAGATAGAATTGCTTGGTTAAGATCAAGCAATCTCTCAGGTCTATGTGATCAGAACAGTGATTTCTTTCAATTTGGCATTTTTGCTGATGCTCTAAATTTGGAAATTACGGCCTCAAAATTCTTCAACAAATACTATTACTGTCTCTGGTGGGGACTAAGGAATCTAAGCTCTGTGGGACAGAATCTCATAACTGGCACACGTGTTGCAGAGATCAATTTTGCTGTGATCATTGCAGTTCTTGGATTGGTGCTTTTTGCATTGCTTATAGGCAATATGCAAACCTACCTGCAATCCACCACTACGCGGCTAGAAGAATGGAGAATAAGAAGGACAGATACGGAAAGATGGATGCATCACAGGCAGCTCCCACGTTACCTGAAGCAAAACGTGCGACGTCATGAACAATTCAGATGGGTTGCTACTAGGGGAGTTGATGAGGAAACTATTCTTAGAGACCTTCCCACAGATCTAAGACGTGACATCAAACGCCACCTTTGCCTCAATCTAGTTCGACAAGTACCACTATTTGATCAAATGGATGAAAGGATGCTGGATGCAATATGTGAAAGGCTGAAACCTTCTCTTTTCACTCCAGGCGCTTGTGTGGTTCGCGAAGGTGACCTTGTGAATGAGATGCTTTTCATTGTTCGAGGACGCCTAGATTCTTGCACCACCAATGGTGGCAGAACAGGTTTCTTTAACACATGCAGGCTTGGCTCTGGTGACTTCTGTGGTGAAGAGCTCCTGCCATGGGCCCTGGATCCTCGTCCAATGGTTGTCCTTCCTTCGTCAACTCGCACGGTGAAAGCCATCACTGAAGTGGAAGCCTTTGCACTCATTGCAGGGGACTTGAAATTTGTGGCAGCACAATTCAGAAGGTTACACAGCAAACAACTGAGGCATACTTTTAGGTTCCACTCCCATCAGTGGAGGACTTGGGCTGCATGCTTCATACAAGCAGCATGGTTCAGGTACAAGAGAATGAAGGAGACAAGTGAGCTCAAGAAAAAGGAGAATCTGATGATGGCCTATGTGCCTGGAACAACTGGCACTGAACATTTCTCTGCACCTCTGCAGGCCCCAAAGGGCACAATGTATGCTGCAAAACTAGCATCAAGCCCAAGGAAAGGTAGGAGCTTGAGATATGGGCCTGAACTTGACATTCTTGGTTCATTGAGGAAGCCCCTTGAACCAGACTTTACTGATGATGATGATGATGAGTGA 2127 0.4302 MVSDRSRSVRFQDELETNKLMDNKESHLSMVSFDEVSESDKQKGGKDAIGKSSDGRELSRVFSEDYDAAQILILDPRGPRVNTWNKIFLAACLLSLFVDPLFFYLPVARKDKCIDMSTGLEVFLTIIRSLIDAFYIIQIYFRFQTAYIAPSSRVSGRGELILDSSKIASKYMRRDFWLDLVAAQPLPQVLIWAVIPNLKGSQMIASRHVLRLVSIFQYLLRLYLIYPLSSEIVKANGVMMEKAWAGAAYNLMLYMLASHVLGSTWYLLSIERQNECWKKACTLQYPQCQYHYLDCQSMNDPDRIAWLRSSNLSGLCDQNSDFFQFGIFADALNLEITASKFFNKYYYCLWWGLRNLSSVGQNLITGTRVAEINFAVIIAVLGLVLFALLIGNMQTYLQSTTTRLEEWRIRRTDTERWMHHRQLPRYLKQNVRRHEQFRWVATRGVDEETILRDLPTDLRRDIKRHLCLNLVRQVPLFDQMDERMLDAICERLKPSLFTPGACVVREGDLVNEMLFIVRGRLDSCTTNGGRTGFFNTCRLGSGDFCGEELLPWALDPRPMVVLPSSTRTVKAITEVEAFALIAGDLKFVAAQFRRLHSKQLRHTFRFHSHQWRTWAACFIQAAWFRYKRMKETSELKKKENLMMAYVPGTTGTEHFSAPLQAPKGTMYAAKLASSPRKGRSLRYGPELDILGSLRKPLEPDFTDDDDDE 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03277 708 Gene3D Jelly Rolls 474 594 IPR014710 -
Pumo3g03277 708 CDD CAP_ED 476 607 IPR000595 -
Pumo3g03277 708 FunFam Cyclic nucleotide-gated ion channel 1 474 592 - -
Pumo3g03277 708 Gene3D Helix hairpin bin 402 467 - -
Pumo3g03277 708 SMART cnmp_10 476 607 IPR000595 -
Pumo3g03277 708 MobiDBLite consensus disorder prediction 34 53 - -
Pumo3g03277 708 PRINTS EAG/ELK/ERG potassium channel family signature 389 398 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo3g03277 708 PRINTS EAG/ELK/ERG potassium channel family signature 371 382 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo3g03277 708 PRINTS EAG/ELK/ERG potassium channel family signature 439 446 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo3g03277 708 PRINTS EAG/ELK/ERG potassium channel family signature 345 362 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo3g03277 708 PRINTS EAG/ELK/ERG potassium channel family signature 139 148 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo3g03277 708 PRINTS EAG/ELK/ERG potassium channel family signature 256 266 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo3g03277 708 Gene3D - 89 400 - -
Pumo3g03277 708 ProSiteProfiles cAMP/cGMP binding motif profile. 476 561 IPR000595 -
Pumo3g03277 708 Pfam Ion transport protein 83 403 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pumo3g03277 708 SUPERFAMILY Voltage-gated potassium channels 75 398 - -
Pumo3g03277 708 SUPERFAMILY cAMP-binding domain-like 405 596 IPR018490 -
Pumo3g03277 708 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 55 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03277 Pumo-Chr3 60339137 60344058 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03277 50 704 Ion Channels AT2G28260 63.664 0.0 871
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03277 K05391 - gmx:100815543 1352.42