Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03272 ATGGAAATCACGAGCAGCAGCCATAGCAGCGGCAGCATGATGTGGTTTTTCAAAGATAAGGGCTTTGATGATAACAGTGTACAAGGAATGTTCCGAAAGTGCCGGCGCCTCGAGGGTGTGCATCAGGAAAGAGCAAGTGAGAATTGGGACTATTTGAGAAGCATTGGCATTGAGGAAAGGAAACTTCCCTCAATTGTTTCAAAATGTCCCAAAATTCTTGCACTGGATCTATATGACAAGATTGTGCCCACTGTTGAGTGTCTCAGGACACTGGGAACAAAACCCCGTGAGGTTGCTTCTGCCATAGCAAAGTTTCCTCACATACTCTCAAACAGTGTGGAAGAGAAGCTGTGTCCCCTCTTGGCATTCTTTCAGACTCTAGGTATCCCTGAAAAGCAAATTGGGAAAATGATACTGCTCAACCCTAGGCTCATCAGCTACAGCATTGAGATGAAGCTGACGGAAATTGTGAACTTCCTTGCCAGCCTTGGTCTCAATAAGGATGGAATGATTGGAAAAGTTATAGTTAGGGACCCTTATATTATGGGTTATAGTGTTGATAAGAGGCTCCGCCCTACTTCGCAGTTTCTCATGTCAATAGGGCTGAGTGAGGTGGATCTTCAAGCCGTGGCTGTGAACTTCCCAGCAATCTTGAGTAGAGATGTGAGTAAGCTTTTGGTACCCAATTATGCGTATCTAAAGAATCGTGGATTTGAAGACAGACAGATAGTTGCTTTGGTGGTTGGTTTTCCTCCTATCCTGATCAAGAGCATCCAGAATTCGTTAGAACCGAGGATCAAGTTTTTAGTAGATGTAATGGGGAGACAGGTTGATGAAGTCATTGATTATCCTTGTTTCTTTCGTCATGGCCTGAAGAGAAGAATAGAGCCACGGTACAAACTTCTAAAGGAGAGGAATTTAGATTGTAGCTTGAGTGAAATGTTGGATTGTAATAGGAAGAAGTTCTTCATGAAGTTTGGCTTGTTAGAAGGACATGCCTTGAGTAACTAG 1011 0.4342 MEITSSSHSSGSMMWFFKDKGFDDNSVQGMFRKCRRLEGVHQERASENWDYLRSIGIEERKLPSIVSKCPKILALDLYDKIVPTVECLRTLGTKPREVASAIAKFPHILSNSVEEKLCPLLAFFQTLGIPEKQIGKMILLNPRLISYSIEMKLTEIVNFLASLGLNKDGMIGKVIVRDPYIMGYSVDKRLRPTSQFLMSIGLSEVDLQAVAVNFPAILSRDVSKLLVPNYAYLKNRGFEDRQIVALVVGFPPILIKSIQNSLEPRIKFLVDVMGRQVDEVIDYPCFFRHGLKRRIEPRYKLLKERNLDCSLSEMLDCNRKKFFMKFGLLEGHALSN 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03272 336 FunFam transcription termination factor MTERF6, chloroplastic/mitochondrial 98 330 - -
Pumo3g03272 336 Pfam mTERF 9 168 IPR003690 GO:0003690|GO:0006355
Pumo3g03272 336 Pfam mTERF 112 322 IPR003690 GO:0003690|GO:0006355
Pumo3g03272 336 SMART mt_12 63 94 IPR003690 GO:0003690|GO:0006355
Pumo3g03272 336 SMART mt_12 208 239 IPR003690 GO:0003690|GO:0006355
Pumo3g03272 336 SMART mt_12 99 130 IPR003690 GO:0003690|GO:0006355
Pumo3g03272 336 SMART mt_12 172 203 IPR003690 GO:0003690|GO:0006355
Pumo3g03272 336 SMART mt_12 277 308 IPR003690 GO:0003690|GO:0006355
Pumo3g03272 336 SMART mt_12 244 276 IPR003690 GO:0003690|GO:0006355
Pumo3g03272 336 SMART mt_12 28 58 IPR003690 GO:0003690|GO:0006355
Pumo3g03272 336 SMART mt_12 135 166 IPR003690 GO:0003690|GO:0006355
Pumo3g03272 336 Gene3D Transcription termination factor 3, mitochondrial 104 330 IPR038538 -
Pumo3g03272 336 PANTHER CGI-12 PROTEIN-RELATED 133 254 IPR003690 GO:0003690|GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Pumo3g03272 mTERF 1.2e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03272 K15032 - gmx:100816929 635.95