Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03268 ATGGGTAGAGCTCCTTGTTGTGACAAGGCCAATGTCAAGAAAGGGCCATGGAGTCCTGAAGAAGATGAAAAGCTAAGAGAGTACATAGAGAAACATGGAACTGGAGGGAACTGGATTGCTCTCCCACAAAAAGCTGGTTTGAAAAGATGTGGGAAAAGTTGTAGACTCAGATGGCTTAATTATCTCAGACCAAACCTTAAGCATGGCGAGTTTTCTGAAGGTGAAGATAGGATAATCTGCACTCTCTTTGCTAGCATTGGAAGCAGGTGGTCAATAATAGCATCTCAGTTGCCAGGCAGGACTGACAATGATATCAAGAACTACTGGAACACCAAGCTTAAGAAAAAAATGATGGGAGTGAACCCTTCAGCACTAAAGAAACCTCACCAAGTTACCCTTTCATCCATGCTTAAAAACTCAACACCATCTTCATCTTCCTCATCATCATCACCAATATCATTCAAAAACAACCACAACTCCTACTACTACCAACCCCATGTGCCCTTCACAGGCTCTGAGTCCATTTCATACTCAAGTCTTTTGAGTGGCAATTCTTCTACGACTTCTGCTTATTCCACCTTTGAGTGCCTTCAGATTTACCAAGTTAATAATAGTGTCTTTATGTTAGGGGGTGAAACAAGTTGCAGCTCTTCTTCAGATGGAAGCTGCAACCACAACAATCAGATCAGTCATGTCAAAGAAGCAGAACTTGGATATGTTGGTGATGGAACTTTTGGTGACCAGATAATAGGTGGTCTTAGTTACCTCTCTAGTGGGGTGGAAGATACCCAAAAGTTGGTGCCCTCCAATGCTGGTAGGGTTAGTGGGGTGACAGATGAACAAAGTAGATTATGGGAAGTAAGTCCATTAGACTATGGTCTAGAAGAAATTAAACAGCTAATAAGCACTAGTAGTTGCAACAACTTTATGTTTGATGACAGCAAGACAGGGGAGATGGTCATGTACTACTGA 972 0.4208 MGRAPCCDKANVKKGPWSPEEDEKLREYIEKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNLKHGEFSEGEDRIICTLFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMGVNPSALKKPHQVTLSSMLKNSTPSSSSSSSSPISFKNNHNSYYYQPHVPFTGSESISYSSLLSGNSSTTSAYSTFECLQIYQVNNSVFMLGGETSCSSSSDGSCNHNNQISHVKEAELGYVGDGTFGDQIIGGLSYLSSGVEDTQKLVPSNAGRVSGVTDEQSRLWEVSPLDYGLEEIKQLISTSSCNNFMFDDSKTGEMVMYY 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03268 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Pumo3g03268 323 Gene3D - 7 68 - -
Pumo3g03268 323 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pumo3g03268 323 FunFam Transcription factor RAX3 7 68 - -
Pumo3g03268 323 MobiDBLite consensus disorder prediction 131 151 - -
Pumo3g03268 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Pumo3g03268 323 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Pumo3g03268 323 CDD SANT 16 62 IPR001005 -
Pumo3g03268 323 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pumo3g03268 323 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Pumo3g03268 323 SMART sant 13 64 IPR001005 -
Pumo3g03268 323 SMART sant 67 115 IPR001005 -
Pumo3g03268 323 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Pumo3g03268 323 Gene3D - 69 140 - -
Pumo3g03268 323 PANTHER OS09G0431300 PROTEIN 1 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03268 Pumo-Chr3 60262191 60264509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03268 1 119 MYB Transcription Factor Family AT5G57620 86.555 4.34e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo3g03268 Myb_DNA-binding 2.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03268 K09422 - gmx:100820139 513.842