Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03239 ATGGATCGGGAAGAATATCTGCGGAAGTGTTCAAATATGAAATGCCAAAGAGTTCAGGTGGACGAATCTTATGTACCTGCTATTCAAGATGACGTAATGGAAGTTGAGCATTTGCTTGCAGAACCTAGAAATGATCATGCTTCCCTGGATGGTAGTTTGGATTCTCATACAACTTTGAATGGCAAGGGTGATTTGGAACTGGAGGTCCTTGACGGATTGCTGGATGATGTTGAAATCGATGATCTTGAAGGAACTGATGGTTTCCCTGGTGCATGTGAAGAATATTTTTTGGATTTTGGATTCGGTGACAAATTTGAGGAGGTACTAGGCTCTGGTCCTTTTGAAGGTTCACTCTTGCAAAACTCAAGTTCTGAAAGTCATTCTTCTGGATTAAGCGGAAGTAGCATTGTTGGTGGGGTATTAGAATCAACAAAAGTACCTATTGCACAATCTGAATGCAAAAATAATTCTCTAGATGAGGCAGTAACCTATGAATCACATGGTGCCTTCAGGAACAATCCAAGTCAACCATCAAAAGTAAATTGCAGGTACAACATTTCACTTGATATACAACATCTGCAAGAGTTGGATAACAATCGTCATTTAGCTGGTGGTATATTGACTTGTAAGAAGGAAAAGGGTCCCGTCGAAAAAGGCCAACCTGCTGCACTTAGAGAGAAGAGATTCCGAAAGCCTACTCAGAGGTACATTGAAGAATTTTCAAATTCAAGGTCAAAGGAAAAGGCACCAACTGCTGGTACAAAAACTAAACATTTAAGTGACTCATCATGTGATGGACTTAATATAAGAATTAAAGCATTGAAAAAGAGTCCAAGGGAGAAGTCTAGTATTGAAAATAGTGATGTGATGCTTCCTGAGTTGCAAGCTCGCAATGGGCGTCCAAAGAAAGAGAAACTTGAGTATGACAACGAGTCATTTCCCTCGGAATCCGAGGATGGATGTTCGACGTCAAAAAGATCTAGAAGGAAAGATCGAAGGAAGCATCAGAAGATGTGGACTCTCCCTGAAGTGTTGAAGTTGGTTGAAGGCATATCTGAATATGGAGTCGGTCGATGGACTGATATTAAGAGGTTTCTGTTTTCTTCTTCAAGCTACCGAACTCCCATAGATCTCAGGGACAAGTGGCGAAACCTTTTGAGAGCCAGTTCTGCACAGAAAAGCACGAGAGAGGCTGAGCAAAATGACGAGCTTGCCCTGCGTCCCTTGCCATTTAATGTGGTGCATCGTGTGCGAGAATTGGCTAAAATTCACCCATACCCAAGGCAACGTGGGTCAAAGAAATCGCCTGTTAGCCAAGCTGGCTCTTCTGTCGTTGCTAAAGATTCTCCTCCCGTTAGTCTTAGCAAAAGAAATGTACATAGGAAGTTTACTTAG 1395 0.4194 MDREEYLRKCSNMKCQRVQVDESYVPAIQDDVMEVEHLLAEPRNDHASLDGSLDSHTTLNGKGDLELEVLDGLLDDVEIDDLEGTDGFPGACEEYFLDFGFGDKFEEVLGSGPFEGSLLQNSSSESHSSGLSGSSIVGGVLESTKVPIAQSECKNNSLDEAVTYESHGAFRNNPSQPSKVNCRYNISLDIQHLQELDNNRHLAGGILTCKKEKGPVEKGQPAALREKRFRKPTQRYIEEFSNSRSKEKAPTAGTKTKHLSDSSCDGLNIRIKALKKSPREKSSIENSDVMLPELQARNGRPKKEKLEYDNESFPSESEDGCSTSKRSRRKDRRKHQKMWTLPEVLKLVEGISEYGVGRWTDIKRFLFSSSSYRTPIDLRDKWRNLLRASSAQKSTREAEQNDELALRPLPFNVVHRVRELAKIHPYPRQRGSKKSPVSQAGSSVVAKDSPPVSLSKRNVHRKFT 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03239 464 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 330 390 IPR017930 -
Pumo3g03239 464 MobiDBLite consensus disorder prediction 297 312 - -
Pumo3g03239 464 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 7 439 - -
Pumo3g03239 464 MobiDBLite consensus disorder prediction 432 449 - -
Pumo3g03239 464 MobiDBLite consensus disorder prediction 422 464 - -
Pumo3g03239 464 MobiDBLite consensus disorder prediction 237 261 - -
Pumo3g03239 464 CDD SANT_TRF 337 387 - -
Pumo3g03239 464 MobiDBLite consensus disorder prediction 275 335 - -
Pumo3g03239 464 SUPERFAMILY Homeodomain-like 338 406 IPR009057 -
Pumo3g03239 464 SMART sant 335 388 IPR001005 -
Pumo3g03239 464 MobiDBLite consensus disorder prediction 237 254 - -
Pumo3g03239 464 Pfam Myb-like DNA-binding domain 338 386 IPR001005 -
Pumo3g03239 464 Gene3D - 324 436 - -
Pumo3g03239 464 ProSiteProfiles Myb-like domain profile. 331 386 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03239 Pumo-Chr3 59757832 59765321 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03239 337 386 Single Myb Histone (SMH) Gene Family AT1G15720 50.000 2.87e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo3g03239 Myb_DNA-binding 2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03239 - - gmx:100810255 785.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03239 3 59757832 59765321 Pumo3g03239 3 59757832 59765321 ECH